Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2788 and Shewana3_2789 are separated by 4 nucleotides Shewana3_2789 and Shewana3_2790 are separated by 107 nucleotides Shewana3_2790 and Shewana3_2791 are separated by 62 nucleotides Shewana3_2791 and Shewana3_2792 overlap by 11 nucleotides
Shewana3_2788: Shewana3_2788 - hypothetical protein (RefSeq), at 3,328,480 to 3,329,154
_2788
Shewana3_2789: Shewana3_2789 - hypothetical protein (RefSeq), at 3,329,159 to 3,329,893
_2789
Shewana3_2790: Shewana3_2790 - fructokinase (RefSeq), at 3,330,001 to 3,330,921
_2790
Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790
_2791
Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076
_2792
Position (kb)
3330
3331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3329.019 kb on - strand, within Shewana3_2788 at 3329.067 kb on - strand, within Shewana3_2788 at 3329.116 kb on - strand at 3329.167 kb on + strand at 3329.454 kb on - strand, within Shewana3_2789 at 3329.535 kb on + strand, within Shewana3_2789 at 3329.638 kb on + strand, within Shewana3_2789 at 3329.646 kb on - strand, within Shewana3_2789 at 3329.646 kb on - strand, within Shewana3_2789 at 3329.696 kb on + strand, within Shewana3_2789 at 3329.910 kb on + strand at 3329.918 kb on - strand at 3330.054 kb on - strand at 3330.117 kb on + strand, within Shewana3_2790 at 3330.125 kb on - strand, within Shewana3_2790 at 3330.325 kb on + strand, within Shewana3_2790 at 3330.421 kb on - strand, within Shewana3_2790 at 3330.624 kb on + strand, within Shewana3_2790 at 3331.004 kb on - strand at 3331.064 kb on - strand at 3331.165 kb on + strand, within Shewana3_2791 at 3331.173 kb on - strand, within Shewana3_2791 at 3331.916 kb on - strand, within Shewana3_2792
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,329,019 - Shewana3_2788 0.80 -1.3 3,329,067 - Shewana3_2788 0.87 -0.3 3,329,116 - +1.1 3,329,167 + -0.4 3,329,454 - Shewana3_2789 0.40 +0.7 3,329,535 + Shewana3_2789 0.51 +0.9 3,329,638 + Shewana3_2789 0.65 +1.5 3,329,646 - Shewana3_2789 0.66 -1.1 3,329,646 - Shewana3_2789 0.66 -0.5 3,329,696 + Shewana3_2789 0.73 +2.2 3,329,910 + +2.2 3,329,918 - +0.9 3,330,054 - -0.4 3,330,117 + Shewana3_2790 0.13 +0.9 3,330,125 - Shewana3_2790 0.13 -1.3 3,330,325 + Shewana3_2790 0.35 +2.5 3,330,421 - Shewana3_2790 0.46 -1.7 3,330,624 + Shewana3_2790 0.68 +2.5 3,331,004 - +0.3 3,331,064 - -0.2 3,331,165 + Shewana3_2791 0.22 -1.5 3,331,173 - Shewana3_2791 0.23 -2.2 3,331,916 - Shewana3_2792 0.46 -1.9
Or see this region's nucleotide sequence