Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2771 and Shewana3_2772 are separated by 391 nucleotides Shewana3_2772 and Shewana3_2773 are separated by 69 nucleotides Shewana3_2773 and Shewana3_2774 are separated by 84 nucleotides
Shewana3_2771: Shewana3_2771 - acetyl-CoA acetyltransferases (RefSeq), at 3,310,297 to 3,311,487
_2771
Shewana3_2772: Shewana3_2772 - homoserine O-succinyltransferase (RefSeq), at 3,311,879 to 3,312,820
_2772
Shewana3_2773: Shewana3_2773 - hypothetical protein (RefSeq), at 3,312,890 to 3,313,324
_2773
Shewana3_2774: Shewana3_2774 - short chain dehydrogenase family protein (RefSeq), at 3,313,409 to 3,314,185
_2774
Position (kb)
3311
3312
3313 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.153 kb on - strand, within Shewana3_2771 at 3311.253 kb on + strand, within Shewana3_2771 at 3311.284 kb on + strand, within Shewana3_2771 at 3311.292 kb on - strand, within Shewana3_2771 at 3311.292 kb on - strand, within Shewana3_2771 at 3311.765 kb on - strand at 3311.773 kb on - strand at 3311.816 kb on - strand at 3312.016 kb on - strand, within Shewana3_2772 at 3312.154 kb on + strand, within Shewana3_2772 at 3312.154 kb on + strand, within Shewana3_2772 at 3312.419 kb on - strand, within Shewana3_2772 at 3313.031 kb on - strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.033 kb on + strand, within Shewana3_2773 at 3313.137 kb on - strand, within Shewana3_2773 at 3313.192 kb on - strand, within Shewana3_2773 at 3313.241 kb on - strand, within Shewana3_2773 at 3313.264 kb on - strand, within Shewana3_2773 at 3313.306 kb on + strand at 3313.314 kb on - strand at 3313.321 kb on - strand at 3313.676 kb on + strand, within Shewana3_2774 at 3313.713 kb on + strand, within Shewana3_2774 at 3313.767 kb on + strand, within Shewana3_2774
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,311,022 + Shewana3_2771 0.61 +0.4 3,311,022 + Shewana3_2771 0.61 -1.3 3,311,153 - Shewana3_2771 0.72 -0.2 3,311,253 + Shewana3_2771 0.80 -1.3 3,311,284 + Shewana3_2771 0.83 -0.3 3,311,292 - Shewana3_2771 0.84 +0.6 3,311,292 - Shewana3_2771 0.84 +1.4 3,311,765 - +0.2 3,311,773 - +0.5 3,311,816 - +0.1 3,312,016 - Shewana3_2772 0.15 -1.6 3,312,154 + Shewana3_2772 0.29 -2.1 3,312,154 + Shewana3_2772 0.29 -1.1 3,312,419 - Shewana3_2772 0.57 -0.1 3,313,031 - Shewana3_2773 0.32 +0.6 3,313,033 + Shewana3_2773 0.33 -0.1 3,313,033 + Shewana3_2773 0.33 +1.2 3,313,137 - Shewana3_2773 0.57 -1.5 3,313,192 - Shewana3_2773 0.69 -2.0 3,313,241 - Shewana3_2773 0.81 +1.9 3,313,264 - Shewana3_2773 0.86 +0.1 3,313,306 + -0.7 3,313,314 - +0.5 3,313,321 - +0.6 3,313,676 + Shewana3_2774 0.34 -0.1 3,313,713 + Shewana3_2774 0.39 -0.5 3,313,767 + Shewana3_2774 0.46 +0.6
Or see this region's nucleotide sequence