Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2752 and Shewana3_2753 are separated by 478 nucleotides Shewana3_2753 and Shewana3_2754 are separated by 10 nucleotides
Shewana3_2752: Shewana3_2752 - hypothetical protein (RefSeq), at 3,283,705 to 3,284,073
_2752
Shewana3_2753: Shewana3_2753 - hypothetical protein (RefSeq), at 3,284,552 to 3,285,409
_2753
Shewana3_2754: Shewana3_2754 - hypothetical protein (RefSeq), at 3,285,420 to 3,286,748
_2754
Position (kb)
3284
3285
3286 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3283.653 kb on - strand at 3283.812 kb on - strand, within Shewana3_2752 at 3283.912 kb on + strand, within Shewana3_2752 at 3283.914 kb on - strand, within Shewana3_2752 at 3284.358 kb on + strand at 3284.384 kb on - strand at 3284.489 kb on + strand at 3284.489 kb on + strand at 3284.497 kb on - strand at 3284.519 kb on - strand at 3284.557 kb on + strand at 3284.576 kb on - strand at 3284.648 kb on - strand, within Shewana3_2753 at 3284.800 kb on + strand, within Shewana3_2753 at 3284.808 kb on + strand, within Shewana3_2753 at 3284.808 kb on - strand, within Shewana3_2753 at 3284.811 kb on - strand, within Shewana3_2753 at 3284.923 kb on + strand, within Shewana3_2753 at 3284.957 kb on - strand, within Shewana3_2753 at 3285.130 kb on + strand, within Shewana3_2753 at 3285.341 kb on + strand at 3285.349 kb on - strand at 3285.391 kb on + strand at 3285.489 kb on + strand at 3285.548 kb on - strand at 3285.560 kb on - strand, within Shewana3_2754 at 3285.606 kb on + strand, within Shewana3_2754 at 3285.621 kb on - strand, within Shewana3_2754 at 3285.803 kb on - strand, within Shewana3_2754 at 3285.968 kb on - strand, within Shewana3_2754 at 3285.968 kb on - strand, within Shewana3_2754 at 3286.203 kb on + strand, within Shewana3_2754 at 3286.208 kb on + strand, within Shewana3_2754 at 3286.247 kb on + strand, within Shewana3_2754 at 3286.293 kb on + strand, within Shewana3_2754 at 3286.301 kb on - strand, within Shewana3_2754 at 3286.323 kb on - strand, within Shewana3_2754 at 3286.352 kb on - strand, within Shewana3_2754 at 3286.371 kb on + strand, within Shewana3_2754
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,283,653 - -0.8 3,283,812 - Shewana3_2752 0.29 -1.9 3,283,912 + Shewana3_2752 0.56 -0.5 3,283,914 - Shewana3_2752 0.57 -0.5 3,284,358 + +0.7 3,284,384 - -0.6 3,284,489 + +0.4 3,284,489 + -1.1 3,284,497 - +1.3 3,284,519 - -0.8 3,284,557 + -1.2 3,284,576 - -0.4 3,284,648 - Shewana3_2753 0.11 -0.7 3,284,800 + Shewana3_2753 0.29 -0.1 3,284,808 + Shewana3_2753 0.30 +0.3 3,284,808 - Shewana3_2753 0.30 -1.2 3,284,811 - Shewana3_2753 0.30 -0.9 3,284,923 + Shewana3_2753 0.43 -1.0 3,284,957 - Shewana3_2753 0.47 -0.6 3,285,130 + Shewana3_2753 0.67 -1.3 3,285,341 + -0.5 3,285,349 - +1.5 3,285,391 + +0.9 3,285,489 + -0.2 3,285,548 - +0.5 3,285,560 - Shewana3_2754 0.11 -1.6 3,285,606 + Shewana3_2754 0.14 -0.5 3,285,621 - Shewana3_2754 0.15 -0.2 3,285,803 - Shewana3_2754 0.29 -0.7 3,285,968 - Shewana3_2754 0.41 +0.5 3,285,968 - Shewana3_2754 0.41 -0.5 3,286,203 + Shewana3_2754 0.59 -0.9 3,286,208 + Shewana3_2754 0.59 -0.7 3,286,247 + Shewana3_2754 0.62 -2.0 3,286,293 + Shewana3_2754 0.66 +0.7 3,286,301 - Shewana3_2754 0.66 -2.8 3,286,323 - Shewana3_2754 0.68 +0.1 3,286,352 - Shewana3_2754 0.70 +0.3 3,286,371 + Shewana3_2754 0.72 -2.1
Or see this region's nucleotide sequence