Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2742 and Shewana3_2743 are separated by 27 nucleotides Shewana3_2743 and Shewana3_2744 are separated by 228 nucleotides Shewana3_2744 and Shewana3_2745 are separated by 368 nucleotides
Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955
_2742
Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531
_2743
Shewana3_2744: Shewana3_2744 - hypothetical protein (RefSeq), at 3,274,760 to 3,275,080
_2744
Shewana3_2745: Shewana3_2745 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,275,449 to 3,277,014
_2745
Position (kb)
3274
3275
3276 Strain fitness (log2 ratio)
-1
0
1
2 at 3273.998 kb on - strand at 3274.251 kb on - strand, within Shewana3_2743 at 3274.337 kb on + strand, within Shewana3_2743 at 3274.374 kb on - strand, within Shewana3_2743 at 3274.377 kb on + strand, within Shewana3_2743 at 3274.385 kb on - strand, within Shewana3_2743 at 3274.435 kb on - strand, within Shewana3_2743 at 3274.749 kb on + strand at 3274.757 kb on - strand at 3274.775 kb on + strand at 3274.783 kb on - strand at 3274.783 kb on - strand at 3275.159 kb on - strand at 3275.234 kb on - strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.379 kb on - strand at 3275.666 kb on - strand, within Shewana3_2745 at 3275.804 kb on + strand, within Shewana3_2745 at 3275.854 kb on + strand, within Shewana3_2745 at 3275.854 kb on + strand, within Shewana3_2745 at 3275.962 kb on - strand, within Shewana3_2745
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,273,998 - -1.4 3,274,251 - Shewana3_2743 0.49 -0.7 3,274,337 + Shewana3_2743 0.64 -0.8 3,274,374 - Shewana3_2743 0.71 +0.2 3,274,377 + Shewana3_2743 0.72 -0.1 3,274,385 - Shewana3_2743 0.73 +0.4 3,274,435 - Shewana3_2743 0.82 +0.0 3,274,749 + +2.2 3,274,757 - -1.4 3,274,775 + +0.2 3,274,783 - -1.5 3,274,783 - -1.1 3,275,159 - -1.4 3,275,234 - -0.9 3,275,376 + -1.2 3,275,376 + +0.2 3,275,376 + +1.0 3,275,379 - +0.8 3,275,666 - Shewana3_2745 0.14 +1.5 3,275,804 + Shewana3_2745 0.23 +1.0 3,275,854 + Shewana3_2745 0.26 +1.9 3,275,854 + Shewana3_2745 0.26 -1.0 3,275,962 - Shewana3_2745 0.33 -1.6
Or see this region's nucleotide sequence