Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2741

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2739 and Shewana3_2740 are separated by 125 nucleotidesShewana3_2740 and Shewana3_2741 are separated by 303 nucleotidesShewana3_2741 and Shewana3_2742 are separated by 315 nucleotidesShewana3_2742 and Shewana3_2743 are separated by 27 nucleotides Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616 _2739 Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140 _2740 Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046 _2741 Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955 _2742 Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531 _2743 Position (kb) 3272 3273 3274Strain fitness (log2 ratio) -2 -1 0 1 2at 3271.629 kb on - strandat 3271.638 kb on - strandat 3271.667 kb on + strandat 3271.667 kb on + strandat 3272.305 kb on + strandat 3272.332 kb on + strandat 3272.369 kb on - strandat 3272.411 kb on - strandat 3272.444 kb on + strandat 3272.452 kb on - strandat 3272.543 kb on + strand, within Shewana3_2741at 3272.551 kb on - strand, within Shewana3_2741at 3272.931 kb on - strand, within Shewana3_2741at 3272.968 kb on + strand, within Shewana3_2741at 3273.449 kb on - strand, within Shewana3_2742at 3273.449 kb on - strand, within Shewana3_2742at 3273.489 kb on + strand, within Shewana3_2742at 3273.542 kb on - strand, within Shewana3_2742at 3273.555 kb on - strand, within Shewana3_2742at 3273.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,271,629 - +0.5
3,271,638 - +1.5
3,271,667 + +0.1
3,271,667 + +1.9
3,272,305 + +0.6
3,272,332 + +1.5
3,272,369 - +0.8
3,272,411 - +0.4
3,272,444 + +0.5
3,272,452 - -0.1
3,272,543 + Shewana3_2741 0.16 +0.7
3,272,551 - Shewana3_2741 0.18 -0.8
3,272,931 - Shewana3_2741 0.81 -0.8
3,272,968 + Shewana3_2741 0.87 -1.4
3,273,449 - Shewana3_2742 0.15 -1.0
3,273,449 - Shewana3_2742 0.15 -0.4
3,273,489 + Shewana3_2742 0.21 -2.6
3,273,542 - Shewana3_2742 0.30 -0.2
3,273,555 - Shewana3_2742 0.32 +0.1
3,273,998 - -1.4

Or see this region's nucleotide sequence