Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2739 and Shewana3_2740 are separated by 125 nucleotides Shewana3_2740 and Shewana3_2741 are separated by 303 nucleotides Shewana3_2741 and Shewana3_2742 are separated by 315 nucleotides Shewana3_2742 and Shewana3_2743 are separated by 27 nucleotides
Shewana3_2739: Shewana3_2739 - hypothetical protein (RefSeq), at 3,271,044 to 3,271,616
_2739
Shewana3_2740: Shewana3_2740 - hypothetical protein (RefSeq), at 3,271,742 to 3,272,140
_2740
Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046
_2741
Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955
_2742
Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531
_2743
Position (kb)
3272
3273
3274 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3271.629 kb on - strand at 3271.638 kb on - strand at 3271.667 kb on + strand at 3271.667 kb on + strand at 3272.305 kb on + strand at 3272.332 kb on + strand at 3272.369 kb on - strand at 3272.411 kb on - strand at 3272.444 kb on + strand at 3272.452 kb on - strand at 3272.543 kb on + strand, within Shewana3_2741 at 3272.551 kb on - strand, within Shewana3_2741 at 3272.931 kb on - strand, within Shewana3_2741 at 3272.968 kb on + strand, within Shewana3_2741 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.489 kb on + strand, within Shewana3_2742 at 3273.542 kb on - strand, within Shewana3_2742 at 3273.555 kb on - strand, within Shewana3_2742 at 3273.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,271,629 - +0.5 3,271,638 - +1.5 3,271,667 + +0.1 3,271,667 + +1.9 3,272,305 + +0.6 3,272,332 + +1.5 3,272,369 - +0.8 3,272,411 - +0.4 3,272,444 + +0.5 3,272,452 - -0.1 3,272,543 + Shewana3_2741 0.16 +0.7 3,272,551 - Shewana3_2741 0.18 -0.8 3,272,931 - Shewana3_2741 0.81 -0.8 3,272,968 + Shewana3_2741 0.87 -1.4 3,273,449 - Shewana3_2742 0.15 -1.0 3,273,449 - Shewana3_2742 0.15 -0.4 3,273,489 + Shewana3_2742 0.21 -2.6 3,273,542 - Shewana3_2742 0.30 -0.2 3,273,555 - Shewana3_2742 0.32 +0.1 3,273,998 - -1.4
Or see this region's nucleotide sequence