Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2700 and Shewana3_2701 are separated by 5 nucleotides Shewana3_2701 and Shewana3_2702 are separated by 12 nucleotides
Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760
_2700
Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136
_2701
Shewana3_2702: Shewana3_2702 - DeoR family transcriptional regulator (RefSeq), at 3,229,149 to 3,229,934
_2702
Position (kb)
3227
3228
3229
3230 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3227.258 kb on + strand, within Shewana3_2700 at 3227.266 kb on - strand, within Shewana3_2700 at 3227.335 kb on - strand, within Shewana3_2700 at 3227.368 kb on + strand, within Shewana3_2700 at 3227.536 kb on + strand, within Shewana3_2700 at 3227.659 kb on - strand at 3227.674 kb on + strand at 3227.685 kb on + strand at 3227.905 kb on + strand, within Shewana3_2701 at 3227.913 kb on - strand, within Shewana3_2701 at 3227.943 kb on - strand, within Shewana3_2701 at 3228.012 kb on + strand, within Shewana3_2701 at 3228.066 kb on + strand, within Shewana3_2701 at 3228.076 kb on + strand, within Shewana3_2701 at 3228.175 kb on - strand, within Shewana3_2701 at 3229.024 kb on + strand at 3229.032 kb on - strand at 3229.102 kb on - strand at 3229.351 kb on + strand, within Shewana3_2702 at 3229.503 kb on + strand, within Shewana3_2702 at 3229.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,227,258 + Shewana3_2700 0.61 -1.1 3,227,266 - Shewana3_2700 0.62 -0.2 3,227,335 - Shewana3_2700 0.67 -0.4 3,227,368 + Shewana3_2700 0.69 -0.4 3,227,536 + Shewana3_2700 0.83 -3.4 3,227,659 - -1.5 3,227,674 + -1.1 3,227,685 + +2.1 3,227,905 + Shewana3_2701 0.10 +0.3 3,227,913 - Shewana3_2701 0.11 -1.8 3,227,943 - Shewana3_2701 0.13 -1.5 3,228,012 + Shewana3_2701 0.18 -0.7 3,228,066 + Shewana3_2701 0.22 -0.3 3,228,076 + Shewana3_2701 0.23 -0.6 3,228,175 - Shewana3_2701 0.30 +0.1 3,229,024 + -0.5 3,229,032 - +0.9 3,229,102 - -1.6 3,229,351 + Shewana3_2702 0.26 +2.0 3,229,503 + Shewana3_2702 0.45 +1.0 3,229,927 + +0.3
Or see this region's nucleotide sequence