Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2688

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2687 and Shewana3_2688 are separated by 783 nucleotidesShewana3_2688 and Shewana3_2689 are separated by 82 nucleotidesShewana3_2689 and Shewana3_2690 are separated by 142 nucleotides Shewana3_2687: Shewana3_2687 - NAD-dependent DNA ligase (RefSeq), at 3,214,353 to 3,215,249 _2687 Shewana3_2688: Shewana3_2688 - hypothetical protein (RefSeq), at 3,216,033 to 3,216,488 _2688 Shewana3_2689: Shewana3_2689 - hypothetical protein (RefSeq), at 3,216,571 to 3,216,978 _2689 Shewana3_2690: Shewana3_2690 - short chain dehydrogenase (RefSeq), at 3,217,121 to 3,217,888 _2690 Position (kb) 3216 3217Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3215.095 kb on + strand, within Shewana3_2687at 3215.098 kb on - strand, within Shewana3_2687at 3215.103 kb on - strandat 3215.103 kb on - strand, within Shewana3_2687at 3215.105 kb on + strand, within Shewana3_2687at 3215.105 kb on + strand, within Shewana3_2687at 3215.108 kb on - strand, within Shewana3_2687at 3215.113 kb on - strand, within Shewana3_2687at 3215.163 kb on + strandat 3215.163 kb on + strandat 3215.194 kb on - strandat 3215.202 kb on + strandat 3215.202 kb on + strandat 3215.202 kb on + strandat 3215.202 kb on + strandat 3215.202 kb on + strandat 3215.203 kb on + strandat 3215.203 kb on + strandat 3215.210 kb on - strandat 3215.210 kb on - strandat 3215.210 kb on - strandat 3215.210 kb on - strandat 3215.210 kb on - strandat 3215.210 kb on - strandat 3215.218 kb on + strandat 3215.257 kb on - strandat 3215.259 kb on - strandat 3215.284 kb on - strandat 3215.289 kb on - strandat 3215.344 kb on + strandat 3215.347 kb on - strandat 3215.352 kb on - strandat 3215.352 kb on - strandat 3215.371 kb on + strandat 3215.430 kb on - strandat 3215.466 kb on - strandat 3215.490 kb on + strandat 3215.515 kb on - strandat 3215.515 kb on - strandat 3215.615 kb on - strandat 3215.874 kb on + strandat 3215.882 kb on - strandat 3215.882 kb on - strandat 3215.977 kb on - strandat 3216.096 kb on + strand, within Shewana3_2688at 3216.143 kb on + strand, within Shewana3_2688at 3216.263 kb on - strand, within Shewana3_2688at 3216.263 kb on - strand, within Shewana3_2688at 3216.522 kb on + strandat 3216.531 kb on - strandat 3216.665 kb on + strand, within Shewana3_2689at 3216.665 kb on + strand, within Shewana3_2689at 3216.665 kb on + strand, within Shewana3_2689at 3216.730 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.817 kb on + strand, within Shewana3_2689at 3216.825 kb on - strand, within Shewana3_2689at 3216.825 kb on - strand, within Shewana3_2689at 3216.973 kb on + strandat 3216.973 kb on + strandat 3216.988 kb on + strandat 3217.057 kb on + strandat 3217.183 kb on - strandat 3217.275 kb on - strand, within Shewana3_2690at 3217.321 kb on + strand, within Shewana3_2690at 3217.328 kb on - strand, within Shewana3_2690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
3,215,095 + Shewana3_2687 0.83 +2.1
3,215,098 - Shewana3_2687 0.83 +0.4
3,215,103 - +2.6
3,215,103 - Shewana3_2687 0.84 +2.6
3,215,105 + Shewana3_2687 0.84 +3.6
3,215,105 + Shewana3_2687 0.84 +4.6
3,215,108 - Shewana3_2687 0.84 -2.3
3,215,113 - Shewana3_2687 0.85 +0.4
3,215,163 + +3.6
3,215,163 + +0.0
3,215,194 - -0.8
3,215,202 + +0.8
3,215,202 + +1.0
3,215,202 + +2.6
3,215,202 + +0.3
3,215,202 + +1.6
3,215,203 + +0.4
3,215,203 + +1.3
3,215,210 - +0.1
3,215,210 - -1.2
3,215,210 - +0.3
3,215,210 - +0.6
3,215,210 - +1.0
3,215,210 - +0.1
3,215,218 + +1.3
3,215,257 - -1.0
3,215,259 - -1.7
3,215,284 - -1.6
3,215,289 - -1.2
3,215,344 + +2.6
3,215,347 - +0.4
3,215,352 - +0.8
3,215,352 - +0.5
3,215,371 + +1.8
3,215,430 - -1.0
3,215,466 - +0.4
3,215,490 + -1.1
3,215,515 - +1.3
3,215,515 - -0.6
3,215,615 - +1.0
3,215,874 + +1.6
3,215,882 - -2.3
3,215,882 - -1.3
3,215,977 - -1.3
3,216,096 + Shewana3_2688 0.14 +1.3
3,216,143 + Shewana3_2688 0.24 -0.2
3,216,263 - Shewana3_2688 0.50 -0.7
3,216,263 - Shewana3_2688 0.50 -2.0
3,216,522 + -0.6
3,216,531 - +0.9
3,216,665 + Shewana3_2689 0.23 -0.2
3,216,665 + Shewana3_2689 0.23 -0.3
3,216,665 + Shewana3_2689 0.23 -0.2
3,216,730 + Shewana3_2689 0.39 +0.1
3,216,817 + Shewana3_2689 0.60 +0.1
3,216,817 + Shewana3_2689 0.60 -0.8
3,216,817 + Shewana3_2689 0.60 -0.5
3,216,817 + Shewana3_2689 0.60 +0.4
3,216,817 + Shewana3_2689 0.60 -1.5
3,216,817 + Shewana3_2689 0.60 +2.4
3,216,825 - Shewana3_2689 0.62 +1.0
3,216,825 - Shewana3_2689 0.62 +1.6
3,216,973 + -2.1
3,216,973 + -0.8
3,216,988 + -0.5
3,217,057 + -0.7
3,217,183 - -0.1
3,217,275 - Shewana3_2690 0.20 +2.6
3,217,321 + Shewana3_2690 0.26 -2.0
3,217,328 - Shewana3_2690 0.27 +0.3

Or see this region's nucleotide sequence