Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2679 and Shewana3_2680 overlap by 1 nucleotides Shewana3_2680 and Shewana3_2681 are separated by 127 nucleotides Shewana3_2681 and Shewana3_2682 are separated by 232 nucleotides
Shewana3_2679: Shewana3_2679 - hypothetical protein (RefSeq), at 3,203,471 to 3,204,085
_2679
Shewana3_2680: Shewana3_2680 - phage SPO1 DNA polymerase domain-containing protein (RefSeq), at 3,204,085 to 3,204,798
_2680
Shewana3_2681: Shewana3_2681 - vibriolysin (RefSeq), at 3,204,926 to 3,206,428
_2681
Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893
_2682
Position (kb)
3204
3205
3206
3207 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3204.166 kb on + strand, within Shewana3_2680 at 3204.182 kb on - strand, within Shewana3_2680 at 3204.401 kb on + strand, within Shewana3_2680 at 3204.409 kb on - strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.555 kb on + strand, within Shewana3_2680 at 3204.563 kb on - strand, within Shewana3_2680 at 3204.664 kb on - strand, within Shewana3_2680 at 3204.688 kb on - strand, within Shewana3_2680 at 3204.738 kb on + strand at 3204.812 kb on - strand at 3204.875 kb on + strand at 3204.897 kb on - strand at 3204.983 kb on + strand at 3205.155 kb on - strand, within Shewana3_2681 at 3205.216 kb on - strand, within Shewana3_2681 at 3205.546 kb on + strand, within Shewana3_2681 at 3205.559 kb on - strand, within Shewana3_2681 at 3205.639 kb on + strand, within Shewana3_2681 at 3205.740 kb on + strand, within Shewana3_2681 at 3205.748 kb on - strand, within Shewana3_2681 at 3205.988 kb on + strand, within Shewana3_2681 at 3206.076 kb on + strand, within Shewana3_2681 at 3206.298 kb on - strand at 3206.302 kb on + strand at 3206.310 kb on - strand at 3206.396 kb on - strand at 3206.681 kb on - strand at 3206.793 kb on + strand, within Shewana3_2682 at 3207.200 kb on - strand, within Shewana3_2682 at 3207.342 kb on - strand, within Shewana3_2682
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,204,166 + Shewana3_2680 0.11 +1.1 3,204,182 - Shewana3_2680 0.14 -0.6 3,204,401 + Shewana3_2680 0.44 -1.1 3,204,409 - Shewana3_2680 0.45 -1.1 3,204,555 + Shewana3_2680 0.66 +1.3 3,204,555 + Shewana3_2680 0.66 +2.0 3,204,555 + Shewana3_2680 0.66 +1.3 3,204,563 - Shewana3_2680 0.67 -2.0 3,204,664 - Shewana3_2680 0.81 -0.4 3,204,688 - Shewana3_2680 0.84 -0.0 3,204,738 + +0.4 3,204,812 - +0.0 3,204,875 + -0.2 3,204,897 - +0.8 3,204,983 + -1.2 3,205,155 - Shewana3_2681 0.15 -0.9 3,205,216 - Shewana3_2681 0.19 -0.3 3,205,546 + Shewana3_2681 0.41 +0.4 3,205,559 - Shewana3_2681 0.42 -1.1 3,205,639 + Shewana3_2681 0.47 +0.4 3,205,740 + Shewana3_2681 0.54 +2.6 3,205,748 - Shewana3_2681 0.55 -0.8 3,205,988 + Shewana3_2681 0.71 +1.6 3,206,076 + Shewana3_2681 0.77 -1.5 3,206,298 - -0.4 3,206,302 + +0.6 3,206,310 - +1.2 3,206,396 - -0.7 3,206,681 - +0.6 3,206,793 + Shewana3_2682 0.11 +0.4 3,207,200 - Shewana3_2682 0.44 -0.0 3,207,342 - Shewana3_2682 0.55 +1.0
Or see this region's nucleotide sequence