Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2631

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinG and Shewana3_2631 are separated by 9 nucleotidesShewana3_2631 and Shewana3_2632 overlap by 10 nucleotidesShewana3_2632 and Shewana3_2633 are separated by 9 nucleotides Shewana3_2630: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 3,138,875 to 3,140,947 dinG Shewana3_2631: Shewana3_2631 - hypothetical protein (RefSeq), at 3,140,957 to 3,141,730 _2631 Shewana3_2632: Shewana3_2632 - primosomal replication protein N'', putative (RefSeq), at 3,141,721 to 3,142,389 _2632 Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091 _2633 Position (kb) 3140 3141 3142Strain fitness (log2 ratio) -1 0 1 2 3at 3140.205 kb on + strand, within dinGat 3140.205 kb on + strand, within dinGat 3140.205 kb on + strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.242 kb on + strand, within dinGat 3140.242 kb on + strand, within dinGat 3140.250 kb on - strand, within dinGat 3140.379 kb on - strand, within dinGat 3140.466 kb on + strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.743 kb on - strandat 3140.925 kb on + strandat 3141.224 kb on + strand, within Shewana3_2631at 3141.232 kb on - strand, within Shewana3_2631at 3141.434 kb on + strand, within Shewana3_2631at 3141.503 kb on - strand, within Shewana3_2631at 3142.100 kb on - strand, within Shewana3_2632at 3142.455 kb on - strandat 3142.465 kb on + strandat 3142.712 kb on - strand, within Shewana3_2633at 3142.730 kb on - strand, within Shewana3_2633

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,140,205 + dinG Shewana3_2630 0.64 -0.8
3,140,205 + dinG Shewana3_2630 0.64 -0.6
3,140,205 + dinG Shewana3_2630 0.64 -0.4
3,140,213 - dinG Shewana3_2630 0.65 +0.3
3,140,213 - dinG Shewana3_2630 0.65 +1.0
3,140,213 - dinG Shewana3_2630 0.65 +1.3
3,140,242 + dinG Shewana3_2630 0.66 -0.3
3,140,242 + dinG Shewana3_2630 0.66 -0.9
3,140,250 - dinG Shewana3_2630 0.66 +0.8
3,140,379 - dinG Shewana3_2630 0.73 +0.1
3,140,466 + dinG Shewana3_2630 0.77 -1.4
3,140,656 - dinG Shewana3_2630 0.86 +0.8
3,140,656 - dinG Shewana3_2630 0.86 -0.1
3,140,656 - dinG Shewana3_2630 0.86 +2.6
3,140,743 - -0.2
3,140,925 + -0.7
3,141,224 + Shewana3_2631 0.34 -0.4
3,141,232 - Shewana3_2631 0.36 -0.1
3,141,434 + Shewana3_2631 0.62 -0.7
3,141,503 - Shewana3_2631 0.71 -1.5
3,142,100 - Shewana3_2632 0.57 -1.1
3,142,455 - +0.1
3,142,465 + -0.6
3,142,712 - Shewana3_2633 0.45 +0.0
3,142,730 - Shewana3_2633 0.48 +3.0

Or see this region's nucleotide sequence