Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2630

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2629 and dinG are separated by 140 nucleotidesdinG and Shewana3_2631 are separated by 9 nucleotidesShewana3_2631 and Shewana3_2632 overlap by 10 nucleotides Shewana3_2629: Shewana3_2629 - DNA polymerase II (RefSeq), at 3,136,302 to 3,138,734 _2629 Shewana3_2630: dinG - ATP-dependent DNA helicase DinG (RefSeq), at 3,138,875 to 3,140,947 dinG Shewana3_2631: Shewana3_2631 - hypothetical protein (RefSeq), at 3,140,957 to 3,141,730 _2631 Shewana3_2632: Shewana3_2632 - primosomal replication protein N'', putative (RefSeq), at 3,141,721 to 3,142,389 _2632 Position (kb) 3138 3139 3140 3141Strain fitness (log2 ratio) -2 -1 0 1 2at 3137.975 kb on + strand, within Shewana3_2629at 3137.975 kb on + strand, within Shewana3_2629at 3137.982 kb on + strand, within Shewana3_2629at 3138.031 kb on - strand, within Shewana3_2629at 3138.031 kb on - strand, within Shewana3_2629at 3138.426 kb on + strand, within Shewana3_2629at 3138.580 kb on - strandat 3138.619 kb on + strandat 3138.646 kb on - strandat 3139.010 kb on + strandat 3139.162 kb on - strand, within dinGat 3139.627 kb on - strand, within dinGat 3139.923 kb on - strand, within dinGat 3139.937 kb on - strand, within dinGat 3139.937 kb on - strand, within dinGat 3140.205 kb on + strand, within dinGat 3140.205 kb on + strand, within dinGat 3140.205 kb on + strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.213 kb on - strand, within dinGat 3140.242 kb on + strand, within dinGat 3140.242 kb on + strand, within dinGat 3140.250 kb on - strand, within dinGat 3140.379 kb on - strand, within dinGat 3140.466 kb on + strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.656 kb on - strand, within dinGat 3140.743 kb on - strandat 3140.925 kb on + strandat 3141.224 kb on + strand, within Shewana3_2631at 3141.232 kb on - strand, within Shewana3_2631at 3141.434 kb on + strand, within Shewana3_2631at 3141.503 kb on - strand, within Shewana3_2631

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
3,137,975 + Shewana3_2629 0.69 +0.4
3,137,975 + Shewana3_2629 0.69 -1.2
3,137,982 + Shewana3_2629 0.69 -1.8
3,138,031 - Shewana3_2629 0.71 -0.6
3,138,031 - Shewana3_2629 0.71 -0.4
3,138,426 + Shewana3_2629 0.87 -1.0
3,138,580 - +0.0
3,138,619 + +0.0
3,138,646 - -0.9
3,139,010 + -0.6
3,139,162 - dinG Shewana3_2630 0.14 +0.1
3,139,627 - dinG Shewana3_2630 0.36 +0.8
3,139,923 - dinG Shewana3_2630 0.51 -1.4
3,139,937 - dinG Shewana3_2630 0.51 +0.4
3,139,937 - dinG Shewana3_2630 0.51 +1.6
3,140,205 + dinG Shewana3_2630 0.64 -0.8
3,140,205 + dinG Shewana3_2630 0.64 -0.6
3,140,205 + dinG Shewana3_2630 0.64 -0.4
3,140,213 - dinG Shewana3_2630 0.65 +0.3
3,140,213 - dinG Shewana3_2630 0.65 +1.0
3,140,213 - dinG Shewana3_2630 0.65 +1.3
3,140,242 + dinG Shewana3_2630 0.66 -0.3
3,140,242 + dinG Shewana3_2630 0.66 -0.9
3,140,250 - dinG Shewana3_2630 0.66 +0.8
3,140,379 - dinG Shewana3_2630 0.73 +0.1
3,140,466 + dinG Shewana3_2630 0.77 -1.4
3,140,656 - dinG Shewana3_2630 0.86 +0.8
3,140,656 - dinG Shewana3_2630 0.86 -0.1
3,140,656 - dinG Shewana3_2630 0.86 +2.6
3,140,743 - -0.2
3,140,925 + -0.7
3,141,224 + Shewana3_2631 0.34 -0.4
3,141,232 - Shewana3_2631 0.36 -0.1
3,141,434 + Shewana3_2631 0.62 -0.7
3,141,503 - Shewana3_2631 0.71 -1.5

Or see this region's nucleotide sequence