Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2597 and Shewana3_2598 are separated by 311 nucleotides Shewana3_2598 and Shewana3_2599 are separated by 64 nucleotides Shewana3_2599 and ribA are separated by 114 nucleotides ribA and Shewana3_2601 are separated by 263 nucleotides
Shewana3_2597: Shewana3_2597 - L-sorbosone dehydrogenase (SNDH) (RefSeq), at 3,101,150 to 3,102,292
_2597
Shewana3_2598: Shewana3_2598 - hypothetical protein (RefSeq), at 3,102,604 to 3,103,050
_2598
Shewana3_2599: Shewana3_2599 - hypothetical protein (RefSeq), at 3,103,115 to 3,103,984
_2599
Shewana3_2600: ribA - GTP cyclohydrolase II (RefSeq), at 3,104,099 to 3,104,710
ribA
Shewana3_2601: Shewana3_2601 - hypothetical protein (RefSeq), at 3,104,974 to 3,105,330
_2601
Position (kb)
3103
3104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3102.266 kb on - strand at 3102.565 kb on - strand at 3102.888 kb on + strand, within Shewana3_2598 at 3103.045 kb on + strand at 3103.053 kb on - strand at 3103.239 kb on - strand, within Shewana3_2599 at 3103.437 kb on + strand, within Shewana3_2599 at 3103.521 kb on - strand, within Shewana3_2599 at 3103.589 kb on - strand, within Shewana3_2599 at 3103.808 kb on + strand, within Shewana3_2599 at 3103.816 kb on - strand, within Shewana3_2599 at 3104.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,102,266 - -1.4 3,102,565 - +1.1 3,102,888 + Shewana3_2598 0.64 +0.8 3,103,045 + +0.0 3,103,053 - +2.6 3,103,239 - Shewana3_2599 0.14 +0.5 3,103,437 + Shewana3_2599 0.37 +1.0 3,103,521 - Shewana3_2599 0.47 -1.9 3,103,589 - Shewana3_2599 0.54 +0.3 3,103,808 + Shewana3_2599 0.80 -1.2 3,103,816 - Shewana3_2599 0.81 +2.0 3,104,883 - -0.7
Or see this region's nucleotide sequence