Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2599

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2597 and Shewana3_2598 are separated by 311 nucleotidesShewana3_2598 and Shewana3_2599 are separated by 64 nucleotidesShewana3_2599 and ribA are separated by 114 nucleotidesribA and Shewana3_2601 are separated by 263 nucleotides Shewana3_2597: Shewana3_2597 - L-sorbosone dehydrogenase (SNDH) (RefSeq), at 3,101,150 to 3,102,292 _2597 Shewana3_2598: Shewana3_2598 - hypothetical protein (RefSeq), at 3,102,604 to 3,103,050 _2598 Shewana3_2599: Shewana3_2599 - hypothetical protein (RefSeq), at 3,103,115 to 3,103,984 _2599 Shewana3_2600: ribA - GTP cyclohydrolase II (RefSeq), at 3,104,099 to 3,104,710 ribA Shewana3_2601: Shewana3_2601 - hypothetical protein (RefSeq), at 3,104,974 to 3,105,330 _2601 Position (kb) 3103 3104Strain fitness (log2 ratio) -2 -1 0 1 2at 3102.266 kb on - strandat 3102.565 kb on - strandat 3102.888 kb on + strand, within Shewana3_2598at 3103.045 kb on + strandat 3103.053 kb on - strandat 3103.239 kb on - strand, within Shewana3_2599at 3103.437 kb on + strand, within Shewana3_2599at 3103.521 kb on - strand, within Shewana3_2599at 3103.589 kb on - strand, within Shewana3_2599at 3103.808 kb on + strand, within Shewana3_2599at 3103.816 kb on - strand, within Shewana3_2599at 3104.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,102,266 - -1.4
3,102,565 - +1.1
3,102,888 + Shewana3_2598 0.64 +0.8
3,103,045 + +0.0
3,103,053 - +2.6
3,103,239 - Shewana3_2599 0.14 +0.5
3,103,437 + Shewana3_2599 0.37 +1.0
3,103,521 - Shewana3_2599 0.47 -1.9
3,103,589 - Shewana3_2599 0.54 +0.3
3,103,808 + Shewana3_2599 0.80 -1.2
3,103,816 - Shewana3_2599 0.81 +2.0
3,104,883 - -0.7

Or see this region's nucleotide sequence