Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrmA and Shewana3_2571 are separated by 33 nucleotides Shewana3_2571 and sbcB are separated by 175 nucleotides
Shewana3_2570: rrmA - 23S rRNA methyltransferase A (RefSeq), at 3,074,223 to 3,075,038
rrmA
Shewana3_2571: Shewana3_2571 - hypothetical protein (RefSeq), at 3,075,072 to 3,075,878
_2571
Shewana3_2572: sbcB - exonuclease I (RefSeq), at 3,076,054 to 3,077,466
sbcB
Position (kb)
3075
3076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3074.282 kb on + strand at 3074.492 kb on - strand, within rrmA at 3074.674 kb on + strand, within rrmA at 3074.674 kb on + strand, within rrmA at 3074.700 kb on - strand, within rrmA at 3074.745 kb on + strand, within rrmA at 3075.139 kb on - strand at 3075.262 kb on + strand, within Shewana3_2571 at 3075.591 kb on + strand, within Shewana3_2571 at 3075.810 kb on + strand at 3075.811 kb on + strand at 3075.811 kb on + strand at 3075.819 kb on - strand at 3075.819 kb on - strand at 3075.828 kb on + strand at 3075.841 kb on - strand at 3075.893 kb on + strand at 3076.122 kb on + strand at 3076.130 kb on - strand at 3076.164 kb on - strand at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.348 kb on + strand, within sbcB at 3076.356 kb on - strand, within sbcB at 3076.511 kb on - strand, within sbcB at 3076.574 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.598 kb on + strand, within sbcB at 3076.690 kb on - strand, within sbcB at 3076.762 kb on + strand, within sbcB at 3076.762 kb on + strand, within sbcB
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,074,282 + -0.4 3,074,492 - rrmA Shewana3_2570 0.33 -0.7 3,074,674 + rrmA Shewana3_2570 0.55 +2.6 3,074,674 + rrmA Shewana3_2570 0.55 +0.8 3,074,700 - rrmA Shewana3_2570 0.58 -0.8 3,074,745 + rrmA Shewana3_2570 0.64 +1.6 3,075,139 - +0.8 3,075,262 + Shewana3_2571 0.24 +1.6 3,075,591 + Shewana3_2571 0.64 +0.2 3,075,810 + +2.0 3,075,811 + +1.6 3,075,811 + -0.6 3,075,819 - -0.3 3,075,819 - +1.1 3,075,828 + +2.0 3,075,841 - -2.4 3,075,893 + +1.6 3,076,122 + +2.6 3,076,130 - +1.3 3,076,164 - +1.6 3,076,348 + sbcB Shewana3_2572 0.21 -2.6 3,076,348 + sbcB Shewana3_2572 0.21 +2.0 3,076,348 + sbcB Shewana3_2572 0.21 -2.8 3,076,348 + sbcB Shewana3_2572 0.21 +0.3 3,076,356 - sbcB Shewana3_2572 0.21 +0.3 3,076,511 - sbcB Shewana3_2572 0.32 +2.0 3,076,574 + sbcB Shewana3_2572 0.37 -0.2 3,076,598 + sbcB Shewana3_2572 0.38 -1.2 3,076,598 + sbcB Shewana3_2572 0.38 -1.6 3,076,690 - sbcB Shewana3_2572 0.45 +0.4 3,076,762 + sbcB Shewana3_2572 0.50 +0.6 3,076,762 + sbcB Shewana3_2572 0.50 -1.8
Or see this region's nucleotide sequence