Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2548

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2547 and Shewana3_2548 are separated by 197 nucleotidesShewana3_2548 and asnB are separated by 464 nucleotides Shewana3_2547: Shewana3_2547 - UMP phosphatase (RefSeq), at 3,044,528 to 3,045,274 _2547 Shewana3_2548: Shewana3_2548 - peptidase M28 (RefSeq), at 3,045,472 to 3,047,145 _2548 Shewana3_2549: asnB - asparagine synthetase B (RefSeq), at 3,047,610 to 3,049,274 asnB Position (kb) 3045 3046 3047 3048Strain fitness (log2 ratio) -1 0 1at 3044.675 kb on - strand, within Shewana3_2547at 3044.816 kb on - strand, within Shewana3_2547at 3045.074 kb on + strand, within Shewana3_2547at 3045.172 kb on - strand, within Shewana3_2547at 3045.300 kb on + strandat 3045.465 kb on - strandat 3045.643 kb on - strand, within Shewana3_2548at 3046.148 kb on - strand, within Shewana3_2548at 3046.372 kb on - strand, within Shewana3_2548at 3046.494 kb on - strand, within Shewana3_2548at 3046.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,044,675 - Shewana3_2547 0.20 +0.3
3,044,816 - Shewana3_2547 0.39 -0.2
3,045,074 + Shewana3_2547 0.73 -1.5
3,045,172 - Shewana3_2547 0.86 +1.6
3,045,300 + +1.0
3,045,465 - +1.3
3,045,643 - Shewana3_2548 0.10 -0.8
3,046,148 - Shewana3_2548 0.40 -0.8
3,046,372 - Shewana3_2548 0.54 +1.3
3,046,494 - Shewana3_2548 0.61 +1.0
3,046,999 - -1.0

Or see this region's nucleotide sequence