Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2542 and Shewana3_2543 are separated by 83 nucleotides Shewana3_2543 and upp are separated by 187 nucleotides
Shewana3_2542: Shewana3_2542 - Na+/H+ antiporter NhaC (RefSeq), at 3,038,742 to 3,040,061
_2542
Shewana3_2543: Shewana3_2543 - diguanylate cyclase (RefSeq), at 3,040,145 to 3,041,566
_2543
Shewana3_2544: upp - uracil phosphoribosyltransferase (RefSeq), at 3,041,754 to 3,042,380
upp
Position (kb)
3040
3041
3042 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3039.158 kb on + strand, within Shewana3_2542 at 3039.199 kb on + strand, within Shewana3_2542 at 3039.398 kb on - strand, within Shewana3_2542 at 3039.633 kb on + strand, within Shewana3_2542 at 3039.633 kb on + strand, within Shewana3_2542 at 3039.837 kb on + strand, within Shewana3_2542 at 3039.839 kb on - strand, within Shewana3_2542 at 3040.008 kb on - strand at 3040.008 kb on - strand at 3040.203 kb on + strand at 3040.203 kb on + strand at 3040.298 kb on - strand, within Shewana3_2543 at 3040.379 kb on + strand, within Shewana3_2543 at 3040.717 kb on + strand, within Shewana3_2543 at 3040.735 kb on - strand, within Shewana3_2543 at 3040.735 kb on - strand, within Shewana3_2543 at 3040.824 kb on - strand, within Shewana3_2543 at 3040.932 kb on + strand, within Shewana3_2543 at 3040.940 kb on - strand, within Shewana3_2543 at 3041.045 kb on + strand, within Shewana3_2543 at 3041.321 kb on - strand, within Shewana3_2543 at 3041.386 kb on + strand, within Shewana3_2543 at 3041.393 kb on + strand, within Shewana3_2543 at 3041.394 kb on - strand, within Shewana3_2543 at 3041.401 kb on - strand, within Shewana3_2543 at 3041.537 kb on - strand at 3041.596 kb on + strand at 3041.654 kb on - strand at 3041.672 kb on + strand at 3041.705 kb on + strand at 3041.795 kb on - strand at 3041.795 kb on - strand at 3041.795 kb on - strand at 3041.795 kb on - strand at 3041.809 kb on - strand at 3041.852 kb on - strand, within upp at 3041.852 kb on - strand, within upp at 3041.878 kb on + strand, within upp at 3041.924 kb on + strand, within upp at 3042.060 kb on - strand, within upp at 3042.103 kb on + strand, within upp at 3042.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,039,158 + Shewana3_2542 0.32 +0.0 3,039,199 + Shewana3_2542 0.35 +0.8 3,039,398 - Shewana3_2542 0.50 +0.8 3,039,633 + Shewana3_2542 0.68 -2.2 3,039,633 + Shewana3_2542 0.68 -1.4 3,039,837 + Shewana3_2542 0.83 -0.4 3,039,839 - Shewana3_2542 0.83 +0.4 3,040,008 - +0.7 3,040,008 - +0.4 3,040,203 + +2.6 3,040,203 + +2.0 3,040,298 - Shewana3_2543 0.11 -0.9 3,040,379 + Shewana3_2543 0.16 -0.5 3,040,717 + Shewana3_2543 0.40 +0.8 3,040,735 - Shewana3_2543 0.41 -1.5 3,040,735 - Shewana3_2543 0.41 -0.5 3,040,824 - Shewana3_2543 0.48 -1.1 3,040,932 + Shewana3_2543 0.55 +0.3 3,040,940 - Shewana3_2543 0.56 +0.0 3,041,045 + Shewana3_2543 0.63 -0.5 3,041,321 - Shewana3_2543 0.83 -1.2 3,041,386 + Shewana3_2543 0.87 -1.7 3,041,393 + Shewana3_2543 0.88 +0.6 3,041,394 - Shewana3_2543 0.88 -1.3 3,041,401 - Shewana3_2543 0.88 -0.3 3,041,537 - +0.8 3,041,596 + -0.2 3,041,654 - +2.6 3,041,672 + -1.4 3,041,705 + +1.0 3,041,795 - +0.9 3,041,795 - +0.5 3,041,795 - +1.1 3,041,795 - +0.8 3,041,809 - -0.1 3,041,852 - upp Shewana3_2544 0.16 +0.0 3,041,852 - upp Shewana3_2544 0.16 +1.8 3,041,878 + upp Shewana3_2544 0.20 +2.6 3,041,924 + upp Shewana3_2544 0.27 -0.5 3,042,060 - upp Shewana3_2544 0.49 +1.5 3,042,103 + upp Shewana3_2544 0.56 +1.6 3,042,357 - -0.4
Or see this region's nucleotide sequence