Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2543

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2542 and Shewana3_2543 are separated by 83 nucleotidesShewana3_2543 and upp are separated by 187 nucleotides Shewana3_2542: Shewana3_2542 - Na+/H+ antiporter NhaC (RefSeq), at 3,038,742 to 3,040,061 _2542 Shewana3_2543: Shewana3_2543 - diguanylate cyclase (RefSeq), at 3,040,145 to 3,041,566 _2543 Shewana3_2544: upp - uracil phosphoribosyltransferase (RefSeq), at 3,041,754 to 3,042,380 upp Position (kb) 3040 3041 3042Strain fitness (log2 ratio) -2 -1 0 1 2at 3039.158 kb on + strand, within Shewana3_2542at 3039.199 kb on + strand, within Shewana3_2542at 3039.398 kb on - strand, within Shewana3_2542at 3039.633 kb on + strand, within Shewana3_2542at 3039.633 kb on + strand, within Shewana3_2542at 3039.837 kb on + strand, within Shewana3_2542at 3039.839 kb on - strand, within Shewana3_2542at 3040.008 kb on - strandat 3040.008 kb on - strandat 3040.203 kb on + strandat 3040.203 kb on + strandat 3040.298 kb on - strand, within Shewana3_2543at 3040.379 kb on + strand, within Shewana3_2543at 3040.717 kb on + strand, within Shewana3_2543at 3040.735 kb on - strand, within Shewana3_2543at 3040.735 kb on - strand, within Shewana3_2543at 3040.824 kb on - strand, within Shewana3_2543at 3040.932 kb on + strand, within Shewana3_2543at 3040.940 kb on - strand, within Shewana3_2543at 3041.045 kb on + strand, within Shewana3_2543at 3041.321 kb on - strand, within Shewana3_2543at 3041.386 kb on + strand, within Shewana3_2543at 3041.393 kb on + strand, within Shewana3_2543at 3041.394 kb on - strand, within Shewana3_2543at 3041.401 kb on - strand, within Shewana3_2543at 3041.537 kb on - strandat 3041.596 kb on + strandat 3041.654 kb on - strandat 3041.672 kb on + strandat 3041.705 kb on + strandat 3041.795 kb on - strandat 3041.795 kb on - strandat 3041.795 kb on - strandat 3041.795 kb on - strandat 3041.809 kb on - strandat 3041.852 kb on - strand, within uppat 3041.852 kb on - strand, within uppat 3041.878 kb on + strand, within uppat 3041.924 kb on + strand, within uppat 3042.060 kb on - strand, within uppat 3042.103 kb on + strand, within uppat 3042.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,039,158 + Shewana3_2542 0.32 +0.0
3,039,199 + Shewana3_2542 0.35 +0.8
3,039,398 - Shewana3_2542 0.50 +0.8
3,039,633 + Shewana3_2542 0.68 -2.2
3,039,633 + Shewana3_2542 0.68 -1.4
3,039,837 + Shewana3_2542 0.83 -0.4
3,039,839 - Shewana3_2542 0.83 +0.4
3,040,008 - +0.7
3,040,008 - +0.4
3,040,203 + +2.6
3,040,203 + +2.0
3,040,298 - Shewana3_2543 0.11 -0.9
3,040,379 + Shewana3_2543 0.16 -0.5
3,040,717 + Shewana3_2543 0.40 +0.8
3,040,735 - Shewana3_2543 0.41 -1.5
3,040,735 - Shewana3_2543 0.41 -0.5
3,040,824 - Shewana3_2543 0.48 -1.1
3,040,932 + Shewana3_2543 0.55 +0.3
3,040,940 - Shewana3_2543 0.56 +0.0
3,041,045 + Shewana3_2543 0.63 -0.5
3,041,321 - Shewana3_2543 0.83 -1.2
3,041,386 + Shewana3_2543 0.87 -1.7
3,041,393 + Shewana3_2543 0.88 +0.6
3,041,394 - Shewana3_2543 0.88 -1.3
3,041,401 - Shewana3_2543 0.88 -0.3
3,041,537 - +0.8
3,041,596 + -0.2
3,041,654 - +2.6
3,041,672 + -1.4
3,041,705 + +1.0
3,041,795 - +0.9
3,041,795 - +0.5
3,041,795 - +1.1
3,041,795 - +0.8
3,041,809 - -0.1
3,041,852 - upp Shewana3_2544 0.16 +0.0
3,041,852 - upp Shewana3_2544 0.16 +1.8
3,041,878 + upp Shewana3_2544 0.20 +2.6
3,041,924 + upp Shewana3_2544 0.27 -0.5
3,042,060 - upp Shewana3_2544 0.49 +1.5
3,042,103 + upp Shewana3_2544 0.56 +1.6
3,042,357 - -0.4

Or see this region's nucleotide sequence