Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2520 and Shewana3_2521 are separated by 503 nucleotides Shewana3_2521 and Shewana3_2522 are separated by 60 nucleotides
Shewana3_2520: Shewana3_2520 - aminotransferase (RefSeq), at 3,012,218 to 3,013,576
_2520
Shewana3_2521: Shewana3_2521 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,014,080 to 3,015,681
_2521
Shewana3_2522: Shewana3_2522 - multi-sensor hybrid histidine kinase (RefSeq), at 3,015,742 to 3,019,182
_2522
Position (kb)
3014
3015
3016 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3013.570 kb on + strand at 3013.609 kb on + strand at 3013.609 kb on + strand at 3013.609 kb on + strand at 3013.622 kb on - strand at 3013.632 kb on - strand at 3013.637 kb on - strand at 3013.644 kb on + strand at 3013.649 kb on + strand at 3013.652 kb on - strand at 3013.652 kb on - strand at 3013.682 kb on - strand at 3013.698 kb on + strand at 3013.852 kb on - strand at 3014.234 kb on + strand at 3014.237 kb on - strand at 3014.242 kb on - strand, within Shewana3_2521 at 3014.431 kb on + strand, within Shewana3_2521 at 3014.546 kb on + strand, within Shewana3_2521 at 3014.673 kb on + strand, within Shewana3_2521 at 3014.681 kb on - strand, within Shewana3_2521 at 3014.681 kb on - strand, within Shewana3_2521 at 3014.759 kb on - strand, within Shewana3_2521 at 3015.000 kb on + strand, within Shewana3_2521 at 3015.194 kb on - strand, within Shewana3_2521 at 3015.721 kb on + strand at 3015.752 kb on + strand at 3015.829 kb on - strand at 3015.849 kb on + strand at 3016.069 kb on - strand at 3016.153 kb on - strand, within Shewana3_2522 at 3016.216 kb on - strand, within Shewana3_2522 at 3016.223 kb on - strand, within Shewana3_2522 at 3016.225 kb on + strand, within Shewana3_2522 at 3016.276 kb on + strand, within Shewana3_2522 at 3016.289 kb on - strand, within Shewana3_2522 at 3016.324 kb on + strand, within Shewana3_2522 at 3016.380 kb on - strand, within Shewana3_2522 at 3016.574 kb on - strand, within Shewana3_2522 at 3016.586 kb on + strand, within Shewana3_2522 at 3016.594 kb on - strand, within Shewana3_2522
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,013,570 + +0.6 3,013,609 + +1.5 3,013,609 + -0.9 3,013,609 + +2.1 3,013,622 - +0.3 3,013,632 - -1.3 3,013,637 - -0.8 3,013,644 + -0.3 3,013,649 + -0.4 3,013,652 - -2.4 3,013,652 - +1.5 3,013,682 - +0.6 3,013,698 + -0.3 3,013,852 - -0.1 3,014,234 + +2.6 3,014,237 - -0.4 3,014,242 - Shewana3_2521 0.10 -0.0 3,014,431 + Shewana3_2521 0.22 +1.6 3,014,546 + Shewana3_2521 0.29 +3.2 3,014,673 + Shewana3_2521 0.37 +0.8 3,014,681 - Shewana3_2521 0.38 +2.6 3,014,681 - Shewana3_2521 0.38 +2.1 3,014,759 - Shewana3_2521 0.42 -0.6 3,015,000 + Shewana3_2521 0.57 -0.8 3,015,194 - Shewana3_2521 0.70 +1.6 3,015,721 + +0.6 3,015,752 + -1.2 3,015,829 - -0.0 3,015,849 + +0.5 3,016,069 - -0.8 3,016,153 - Shewana3_2522 0.12 -2.2 3,016,216 - Shewana3_2522 0.14 -0.9 3,016,223 - Shewana3_2522 0.14 -1.8 3,016,225 + Shewana3_2522 0.14 +1.1 3,016,276 + Shewana3_2522 0.16 +0.3 3,016,289 - Shewana3_2522 0.16 -1.4 3,016,324 + Shewana3_2522 0.17 +1.1 3,016,380 - Shewana3_2522 0.19 +0.4 3,016,574 - Shewana3_2522 0.24 -1.0 3,016,586 + Shewana3_2522 0.25 +0.5 3,016,594 - Shewana3_2522 0.25 +0.5
Or see this region's nucleotide sequence