Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2510 and Shewana3_2511 are separated by 69 nucleotides Shewana3_2511 and Shewana3_2512 are separated by 324 nucleotides Shewana3_2512 and Shewana3_2513 are separated by 287 nucleotides
Shewana3_2510: Shewana3_2510 - cytochrome B561 (RefSeq), at 3,000,734 to 3,001,480
_2510
Shewana3_2511: Shewana3_2511 - cytochrome c3 (RefSeq), at 3,001,550 to 3,001,900
_2511
Shewana3_2512: Shewana3_2512 - heat shock protein HtpX (RefSeq), at 3,002,225 to 3,003,088
_2512
Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086
_2513
Position (kb)
3002
3003
3004 Strain fitness (log2 ratio)
-1
0
1
2 at 3001.251 kb on + strand, within Shewana3_2510 at 3001.259 kb on - strand, within Shewana3_2510 at 3001.284 kb on - strand, within Shewana3_2510 at 3001.329 kb on + strand, within Shewana3_2510 at 3001.465 kb on + strand at 3001.648 kb on - strand, within Shewana3_2511 at 3001.833 kb on - strand, within Shewana3_2511 at 3001.855 kb on + strand, within Shewana3_2511 at 3001.910 kb on + strand at 3001.952 kb on - strand at 3002.156 kb on - strand at 3002.190 kb on + strand at 3002.537 kb on - strand, within Shewana3_2512 at 3002.876 kb on - strand, within Shewana3_2512 at 3002.881 kb on - strand, within Shewana3_2512 at 3002.889 kb on - strand, within Shewana3_2512 at 3003.166 kb on + strand at 3003.208 kb on + strand at 3003.237 kb on + strand at 3003.391 kb on + strand at 3003.394 kb on + strand at 3003.402 kb on - strand at 3003.404 kb on + strand at 3003.404 kb on + strand at 3003.404 kb on + strand at 3003.416 kb on + strand at 3003.431 kb on - strand at 3003.960 kb on - strand, within Shewana3_2513
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 3,001,251 + Shewana3_2510 0.69 -0.9 3,001,259 - Shewana3_2510 0.70 -0.2 3,001,284 - Shewana3_2510 0.74 -0.0 3,001,329 + Shewana3_2510 0.80 +0.4 3,001,465 + +0.9 3,001,648 - Shewana3_2511 0.28 +0.8 3,001,833 - Shewana3_2511 0.81 +0.3 3,001,855 + Shewana3_2511 0.87 +0.1 3,001,910 + -0.5 3,001,952 - +0.2 3,002,156 - +0.8 3,002,190 + +2.7 3,002,537 - Shewana3_2512 0.36 +0.1 3,002,876 - Shewana3_2512 0.75 -1.0 3,002,881 - Shewana3_2512 0.76 +0.3 3,002,889 - Shewana3_2512 0.77 +0.9 3,003,166 + +2.1 3,003,208 + +0.2 3,003,237 + +1.2 3,003,391 + -1.6 3,003,394 + -1.2 3,003,402 - +0.4 3,003,404 + +1.7 3,003,404 + -0.2 3,003,404 + -0.4 3,003,416 + -0.1 3,003,431 - -0.3 3,003,960 - Shewana3_2513 0.82 +0.4
Or see this region's nucleotide sequence