Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2511

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2510 and Shewana3_2511 are separated by 69 nucleotidesShewana3_2511 and Shewana3_2512 are separated by 324 nucleotides Shewana3_2510: Shewana3_2510 - cytochrome B561 (RefSeq), at 3,000,734 to 3,001,480 _2510 Shewana3_2511: Shewana3_2511 - cytochrome c3 (RefSeq), at 3,001,550 to 3,001,900 _2511 Shewana3_2512: Shewana3_2512 - heat shock protein HtpX (RefSeq), at 3,002,225 to 3,003,088 _2512 Position (kb) 3001 3002Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3000.550 kb on - strandat 3000.557 kb on + strandat 3000.744 kb on - strandat 3000.815 kb on + strand, within Shewana3_2510at 3000.907 kb on + strand, within Shewana3_2510at 3001.013 kb on - strand, within Shewana3_2510at 3001.058 kb on + strand, within Shewana3_2510at 3001.168 kb on - strand, within Shewana3_2510at 3001.251 kb on + strand, within Shewana3_2510at 3001.259 kb on - strand, within Shewana3_2510at 3001.284 kb on - strand, within Shewana3_2510at 3001.329 kb on + strand, within Shewana3_2510at 3001.465 kb on + strandat 3001.648 kb on - strand, within Shewana3_2511at 3001.833 kb on - strand, within Shewana3_2511at 3001.855 kb on + strand, within Shewana3_2511at 3001.910 kb on + strandat 3001.952 kb on - strandat 3002.156 kb on - strandat 3002.190 kb on + strandat 3002.537 kb on - strand, within Shewana3_2512at 3002.876 kb on - strand, within Shewana3_2512at 3002.881 kb on - strand, within Shewana3_2512at 3002.889 kb on - strand, within Shewana3_2512

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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3,000,550 - +3.7
3,000,557 + +3.7
3,000,744 - +0.7
3,000,815 + Shewana3_2510 0.11 +0.4
3,000,907 + Shewana3_2510 0.23 +0.4
3,001,013 - Shewana3_2510 0.37 +2.7
3,001,058 + Shewana3_2510 0.43 +0.4
3,001,168 - Shewana3_2510 0.58 -2.2
3,001,251 + Shewana3_2510 0.69 -0.9
3,001,259 - Shewana3_2510 0.70 -0.2
3,001,284 - Shewana3_2510 0.74 -0.0
3,001,329 + Shewana3_2510 0.80 +0.4
3,001,465 + +0.9
3,001,648 - Shewana3_2511 0.28 +0.8
3,001,833 - Shewana3_2511 0.81 +0.3
3,001,855 + Shewana3_2511 0.87 +0.1
3,001,910 + -0.5
3,001,952 - +0.2
3,002,156 - +0.8
3,002,190 + +2.7
3,002,537 - Shewana3_2512 0.36 +0.1
3,002,876 - Shewana3_2512 0.75 -1.0
3,002,881 - Shewana3_2512 0.76 +0.3
3,002,889 - Shewana3_2512 0.77 +0.9

Or see this region's nucleotide sequence