Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2484
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,970,067 | + | Shewana3_2483 | 0.45 | +0.3 | |
2,970,094 | - | Shewana3_2483 | 0.47 | -0.3 | |
2,970,115 | - | Shewana3_2483 | 0.48 | +1.0 | |
2,970,146 | - | Shewana3_2483 | 0.50 | -0.7 | |
2,970,276 | - | Shewana3_2483 | 0.60 | +0.4 | |
2,970,286 | + | Shewana3_2483 | 0.60 | +1.2 | |
2,970,381 | - | Shewana3_2483 | 0.67 | -0.5 | |
2,970,490 | - | Shewana3_2483 | 0.75 | -1.0 | |
2,970,653 | - | Shewana3_2483 | 0.87 | -0.9 | |
2,970,779 | + | -0.9 | |||
2,970,797 | - | +1.7 | |||
2,970,852 | + | +1.9 | |||
2,971,061 | - | -1.9 | |||
2,971,272 | - | Shewana3_2484 | 0.44 | -0.1 | |
2,971,323 | + | Shewana3_2484 | 0.54 | +2.1 | |
2,971,407 | - | Shewana3_2484 | 0.69 | -2.8 | |
2,971,409 | + | Shewana3_2484 | 0.69 | +1.4 | |
2,971,758 | - | +0.9 | |||
2,971,768 | + | +3.1 | |||
2,971,787 | - | +0.5 | |||
2,971,904 | - | +2.7 | |||
2,971,904 | - | -0.7 | |||
2,971,937 | - | +0.0 | |||
2,971,973 | + | Shewana3_2485 | 0.11 | +0.1 | |
2,972,025 | - | Shewana3_2485 | 0.19 | +1.1 | |
2,972,103 | - | Shewana3_2485 | 0.32 | -0.8 | |
2,972,113 | - | Shewana3_2485 | 0.33 | +0.7 | |
2,972,113 | - | Shewana3_2485 | 0.33 | +0.0 | |
2,972,282 | + | Shewana3_2485 | 0.60 | -1.1 | |
2,972,282 | + | Shewana3_2485 | 0.60 | -0.2 | |
2,972,290 | - | Shewana3_2485 | 0.62 | +3.7 |
Or see this region's nucleotide sequence