Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2479 and Shewana3_2480 are separated by 160 nucleotides Shewana3_2480 and Shewana3_2481 are separated by 214 nucleotides
Shewana3_2479: Shewana3_2479 - hypothetical protein (RefSeq), at 2,964,842 to 2,965,636
_2479
Shewana3_2480: Shewana3_2480 - LysR family transcriptional regulator (RefSeq), at 2,965,797 to 2,966,711
_2480
Shewana3_2481: Shewana3_2481 - homogentisate 1,2-dioxygenase (RefSeq), at 2,966,926 to 2,968,086
_2481
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2964.813 kb on - strand at 2964.813 kb on - strand at 2964.847 kb on - strand at 2964.959 kb on + strand, within Shewana3_2479 at 2965.261 kb on - strand, within Shewana3_2479 at 2965.292 kb on + strand, within Shewana3_2479 at 2965.341 kb on + strand, within Shewana3_2479 at 2965.526 kb on - strand, within Shewana3_2479 at 2965.541 kb on + strand, within Shewana3_2479 at 2965.634 kb on - strand at 2965.638 kb on + strand at 2965.660 kb on - strand at 2966.017 kb on - strand, within Shewana3_2480 at 2966.282 kb on - strand, within Shewana3_2480 at 2966.289 kb on - strand, within Shewana3_2480 at 2966.575 kb on + strand, within Shewana3_2480 at 2967.123 kb on - strand, within Shewana3_2481 at 2967.365 kb on + strand, within Shewana3_2481 at 2967.391 kb on - strand, within Shewana3_2481 at 2967.614 kb on + strand, within Shewana3_2481 at 2967.636 kb on - strand, within Shewana3_2481 at 2967.658 kb on + strand, within Shewana3_2481
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,964,813 - +2.2 2,964,813 - -0.9 2,964,847 - -3.1 2,964,959 + Shewana3_2479 0.15 +0.5 2,965,261 - Shewana3_2479 0.53 -2.9 2,965,292 + Shewana3_2479 0.57 +2.8 2,965,341 + Shewana3_2479 0.63 +2.8 2,965,526 - Shewana3_2479 0.86 +0.6 2,965,541 + Shewana3_2479 0.88 +2.2 2,965,634 - +2.2 2,965,638 + +2.2 2,965,660 - -0.3 2,966,017 - Shewana3_2480 0.24 -0.3 2,966,282 - Shewana3_2480 0.53 +1.5 2,966,289 - Shewana3_2480 0.54 +2.5 2,966,575 + Shewana3_2480 0.85 +0.9 2,967,123 - Shewana3_2481 0.17 -1.4 2,967,365 + Shewana3_2481 0.38 -1.7 2,967,391 - Shewana3_2481 0.40 +2.8 2,967,614 + Shewana3_2481 0.59 -0.0 2,967,636 - Shewana3_2481 0.61 +1.0 2,967,658 + Shewana3_2481 0.63 -1.2
Or see this region's nucleotide sequence