Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2477 and Shewana3_2478 are separated by 75 nucleotides Shewana3_2478 and Shewana3_2479 are separated by 65 nucleotides Shewana3_2479 and Shewana3_2480 are separated by 160 nucleotides
Shewana3_2477: Shewana3_2477 - hypothetical protein (RefSeq), at 2,963,901 to 2,964,362
_2477
Shewana3_2478: Shewana3_2478 - hypothetical protein (RefSeq), at 2,964,438 to 2,964,776
_2478
Shewana3_2479: Shewana3_2479 - hypothetical protein (RefSeq), at 2,964,842 to 2,965,636
_2479
Shewana3_2480: Shewana3_2480 - LysR family transcriptional regulator (RefSeq), at 2,965,797 to 2,966,711
_2480
Position (kb)
2964
2965
2966 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2963.959 kb on - strand, within Shewana3_2477 at 2964.190 kb on + strand, within Shewana3_2477 at 2964.198 kb on - strand, within Shewana3_2477 at 2964.198 kb on - strand, within Shewana3_2477 at 2964.295 kb on + strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.303 kb on - strand, within Shewana3_2477 at 2964.323 kb on - strand at 2964.363 kb on + strand at 2964.395 kb on + strand at 2964.736 kb on + strand, within Shewana3_2478 at 2964.813 kb on - strand at 2964.813 kb on - strand at 2964.847 kb on - strand at 2964.959 kb on + strand, within Shewana3_2479 at 2965.261 kb on - strand, within Shewana3_2479 at 2965.292 kb on + strand, within Shewana3_2479 at 2965.341 kb on + strand, within Shewana3_2479 at 2965.526 kb on - strand, within Shewana3_2479 at 2965.541 kb on + strand, within Shewana3_2479 at 2965.634 kb on - strand at 2965.638 kb on + strand at 2965.660 kb on - strand at 2966.017 kb on - strand, within Shewana3_2480 at 2966.282 kb on - strand, within Shewana3_2480 at 2966.289 kb on - strand, within Shewana3_2480 at 2966.575 kb on + strand, within Shewana3_2480
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,963,959 - Shewana3_2477 0.13 +3.8 2,964,190 + Shewana3_2477 0.63 -0.4 2,964,198 - Shewana3_2477 0.64 +0.3 2,964,198 - Shewana3_2477 0.64 +1.0 2,964,295 + Shewana3_2477 0.85 +0.0 2,964,303 - Shewana3_2477 0.87 +0.2 2,964,303 - Shewana3_2477 0.87 +0.6 2,964,303 - Shewana3_2477 0.87 +1.2 2,964,303 - Shewana3_2477 0.87 +2.2 2,964,323 - +3.8 2,964,363 + +0.7 2,964,395 + +0.9 2,964,736 + Shewana3_2478 0.88 +0.3 2,964,813 - +2.2 2,964,813 - -0.9 2,964,847 - -3.1 2,964,959 + Shewana3_2479 0.15 +0.5 2,965,261 - Shewana3_2479 0.53 -2.9 2,965,292 + Shewana3_2479 0.57 +2.8 2,965,341 + Shewana3_2479 0.63 +2.8 2,965,526 - Shewana3_2479 0.86 +0.6 2,965,541 + Shewana3_2479 0.88 +2.2 2,965,634 - +2.2 2,965,638 + +2.2 2,965,660 - -0.3 2,966,017 - Shewana3_2480 0.24 -0.3 2,966,282 - Shewana3_2480 0.53 +1.5 2,966,289 - Shewana3_2480 0.54 +2.5 2,966,575 + Shewana3_2480 0.85 +0.9
Or see this region's nucleotide sequence