Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2469 and Shewana3_2470 are separated by 302 nucleotides Shewana3_2470 and Shewana3_2471 are separated by 62 nucleotides Shewana3_2471 and Shewana3_2472 overlap by 1 nucleotides
Shewana3_2469: Shewana3_2469 - hypothetical protein (RefSeq), at 2,956,155 to 2,957,090
_2469
Shewana3_2470: Shewana3_2470 - hypothetical protein (RefSeq), at 2,957,393 to 2,957,800
_2470
Shewana3_2471: Shewana3_2471 - alpha/beta fold family hydrolase (RefSeq), at 2,957,863 to 2,958,732
_2471
Shewana3_2472: Shewana3_2472 - oxoglutarate dehydrogenase (succinyl-transferring) (RefSeq), at 2,958,732 to 2,959,757
_2472
Position (kb)
2957
2958
2959 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2957.108 kb on + strand at 2957.644 kb on + strand, within Shewana3_2470 at 2957.684 kb on + strand, within Shewana3_2470 at 2957.779 kb on + strand at 2957.868 kb on - strand at 2957.918 kb on - strand at 2957.994 kb on - strand, within Shewana3_2471 at 2958.142 kb on - strand, within Shewana3_2471 at 2958.332 kb on + strand, within Shewana3_2471 at 2958.665 kb on - strand at 2958.843 kb on + strand, within Shewana3_2472 at 2959.183 kb on - strand, within Shewana3_2472 at 2959.226 kb on + strand, within Shewana3_2472 at 2959.459 kb on - strand, within Shewana3_2472
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,957,108 + +1.8 2,957,644 + Shewana3_2470 0.62 -0.4 2,957,684 + Shewana3_2470 0.71 +0.7 2,957,779 + -1.3 2,957,868 - +1.3 2,957,918 - -1.6 2,957,994 - Shewana3_2471 0.15 -2.3 2,958,142 - Shewana3_2471 0.32 +1.3 2,958,332 + Shewana3_2471 0.54 +0.7 2,958,665 - -0.2 2,958,843 + Shewana3_2472 0.11 +0.4 2,959,183 - Shewana3_2472 0.44 +2.3 2,959,226 + Shewana3_2472 0.48 +3.3 2,959,459 - Shewana3_2472 0.71 -0.3
Or see this region's nucleotide sequence