Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2463 and Shewana3_2464 are separated by 96 nucleotides Shewana3_2464 and Shewana3_2465 are separated by 115 nucleotides Shewana3_2465 and Shewana3_2466 overlap by 8 nucleotides
Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786
_2463
Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440
_2464
Shewana3_2465: Shewana3_2465 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 2,953,556 to 2,954,224
_2465
Shewana3_2466: Shewana3_2466 - anti-ECFsigma factor, ChrR (RefSeq), at 2,954,217 to 2,954,912
_2466
Position (kb)
2953
2954
2955 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2952.807 kb on + strand at 2952.822 kb on - strand at 2952.959 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.009 kb on - strand, within Shewana3_2464 at 2953.148 kb on + strand, within Shewana3_2464 at 2953.171 kb on - strand, within Shewana3_2464 at 2953.180 kb on - strand, within Shewana3_2464 at 2953.421 kb on - strand at 2953.506 kb on + strand at 2953.519 kb on + strand at 2953.704 kb on - strand, within Shewana3_2465 at 2953.781 kb on - strand, within Shewana3_2465 at 2953.930 kb on + strand, within Shewana3_2465 at 2954.560 kb on - strand, within Shewana3_2466 at 2954.804 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.838 kb on + strand, within Shewana3_2466 at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.846 kb on - strand at 2954.858 kb on - strand at 2955.198 kb on - strand at 2955.198 kb on - strand at 2955.224 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,952,807 + +0.3 2,952,822 - -0.0 2,952,959 + Shewana3_2464 0.14 +0.7 2,953,001 + Shewana3_2464 0.21 -1.6 2,953,001 + Shewana3_2464 0.21 +1.2 2,953,009 - Shewana3_2464 0.23 +3.9 2,953,148 + Shewana3_2464 0.47 +0.3 2,953,171 - Shewana3_2464 0.52 -0.4 2,953,180 - Shewana3_2464 0.53 +1.3 2,953,421 - -0.9 2,953,506 + -0.6 2,953,519 + -0.3 2,953,704 - Shewana3_2465 0.22 +1.3 2,953,781 - Shewana3_2465 0.34 +1.9 2,953,930 + Shewana3_2465 0.56 -2.1 2,954,560 - Shewana3_2466 0.49 +2.3 2,954,804 + Shewana3_2466 0.84 +1.4 2,954,838 + Shewana3_2466 0.89 +0.9 2,954,838 + Shewana3_2466 0.89 -0.3 2,954,838 + Shewana3_2466 0.89 +0.2 2,954,838 + Shewana3_2466 0.89 -0.3 2,954,838 + Shewana3_2466 0.89 -1.2 2,954,838 + Shewana3_2466 0.89 +4.3 2,954,846 - -0.6 2,954,846 - +1.1 2,954,846 - -1.1 2,954,846 - +1.5 2,954,846 - +2.1 2,954,846 - -0.5 2,954,846 - +0.2 2,954,858 - +1.3 2,955,198 - +0.7 2,955,198 - +0.7 2,955,224 + -0.0
Or see this region's nucleotide sequence