Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2465

Experiment: Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2463 and Shewana3_2464 are separated by 96 nucleotidesShewana3_2464 and Shewana3_2465 are separated by 115 nucleotidesShewana3_2465 and Shewana3_2466 overlap by 8 nucleotides Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786 _2463 Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440 _2464 Shewana3_2465: Shewana3_2465 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 2,953,556 to 2,954,224 _2465 Shewana3_2466: Shewana3_2466 - anti-ECFsigma factor, ChrR (RefSeq), at 2,954,217 to 2,954,912 _2466 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2952.807 kb on + strandat 2952.822 kb on - strandat 2952.959 kb on + strand, within Shewana3_2464at 2953.001 kb on + strand, within Shewana3_2464at 2953.001 kb on + strand, within Shewana3_2464at 2953.009 kb on - strand, within Shewana3_2464at 2953.148 kb on + strand, within Shewana3_2464at 2953.171 kb on - strand, within Shewana3_2464at 2953.180 kb on - strand, within Shewana3_2464at 2953.421 kb on - strandat 2953.506 kb on + strandat 2953.519 kb on + strandat 2953.704 kb on - strand, within Shewana3_2465at 2953.781 kb on - strand, within Shewana3_2465at 2953.930 kb on + strand, within Shewana3_2465at 2954.560 kb on - strand, within Shewana3_2466at 2954.804 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.838 kb on + strand, within Shewana3_2466at 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.846 kb on - strandat 2954.858 kb on - strandat 2955.198 kb on - strandat 2955.198 kb on - strandat 2955.224 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
remove
2,952,807 + +0.3
2,952,822 - -0.0
2,952,959 + Shewana3_2464 0.14 +0.7
2,953,001 + Shewana3_2464 0.21 -1.6
2,953,001 + Shewana3_2464 0.21 +1.2
2,953,009 - Shewana3_2464 0.23 +3.9
2,953,148 + Shewana3_2464 0.47 +0.3
2,953,171 - Shewana3_2464 0.52 -0.4
2,953,180 - Shewana3_2464 0.53 +1.3
2,953,421 - -0.9
2,953,506 + -0.6
2,953,519 + -0.3
2,953,704 - Shewana3_2465 0.22 +1.3
2,953,781 - Shewana3_2465 0.34 +1.9
2,953,930 + Shewana3_2465 0.56 -2.1
2,954,560 - Shewana3_2466 0.49 +2.3
2,954,804 + Shewana3_2466 0.84 +1.4
2,954,838 + Shewana3_2466 0.89 +0.9
2,954,838 + Shewana3_2466 0.89 -0.3
2,954,838 + Shewana3_2466 0.89 +0.2
2,954,838 + Shewana3_2466 0.89 -0.3
2,954,838 + Shewana3_2466 0.89 -1.2
2,954,838 + Shewana3_2466 0.89 +4.3
2,954,846 - -0.6
2,954,846 - +1.1
2,954,846 - -1.1
2,954,846 - +1.5
2,954,846 - +2.1
2,954,846 - -0.5
2,954,846 - +0.2
2,954,858 - +1.3
2,955,198 - +0.7
2,955,198 - +0.7
2,955,224 + -0.0

Or see this region's nucleotide sequence