Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2462 and Shewana3_2463 are separated by 212 nucleotides Shewana3_2463 and Shewana3_2464 are separated by 96 nucleotides Shewana3_2464 and Shewana3_2465 are separated by 115 nucleotides
Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959
_2462
Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786
_2463
Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440
_2464
Shewana3_2465: Shewana3_2465 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 2,953,556 to 2,954,224
_2465
Position (kb)
2952
2953 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2951.211 kb on - strand, within Shewana3_2462 at 2951.596 kb on + strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.659 kb on - strand, within Shewana3_2462 at 2951.825 kb on + strand, within Shewana3_2462 at 2952.327 kb on - strand, within Shewana3_2463 at 2952.359 kb on + strand, within Shewana3_2463 at 2952.503 kb on - strand, within Shewana3_2463 at 2952.807 kb on + strand at 2952.822 kb on - strand at 2952.959 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.009 kb on - strand, within Shewana3_2464 at 2953.148 kb on + strand, within Shewana3_2464 at 2953.171 kb on - strand, within Shewana3_2464 at 2953.180 kb on - strand, within Shewana3_2464 at 2953.421 kb on - strand at 2953.506 kb on + strand at 2953.519 kb on + strand at 2953.704 kb on - strand, within Shewana3_2465 at 2953.781 kb on - strand, within Shewana3_2465
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,951,211 - Shewana3_2462 0.21 -0.9 2,951,596 + Shewana3_2462 0.61 +1.1 2,951,659 - Shewana3_2462 0.68 -1.5 2,951,659 - Shewana3_2462 0.68 -0.2 2,951,659 - Shewana3_2462 0.68 +1.1 2,951,825 + Shewana3_2462 0.86 +1.3 2,952,327 - Shewana3_2463 0.25 -1.1 2,952,359 + Shewana3_2463 0.30 +0.9 2,952,503 - Shewana3_2463 0.54 -1.9 2,952,807 + +0.3 2,952,822 - -0.0 2,952,959 + Shewana3_2464 0.14 +0.7 2,953,001 + Shewana3_2464 0.21 -1.6 2,953,001 + Shewana3_2464 0.21 +1.2 2,953,009 - Shewana3_2464 0.23 +3.9 2,953,148 + Shewana3_2464 0.47 +0.3 2,953,171 - Shewana3_2464 0.52 -0.4 2,953,180 - Shewana3_2464 0.53 +1.3 2,953,421 - -0.9 2,953,506 + -0.6 2,953,519 + -0.3 2,953,704 - Shewana3_2465 0.22 +1.3 2,953,781 - Shewana3_2465 0.34 +1.9
Or see this region's nucleotide sequence