Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2455 and Shewana3_2456 are separated by 52 nucleotides Shewana3_2456 and Shewana3_2457 are separated by 344 nucleotides Shewana3_2457 and Shewana3_2458 are separated by 261 nucleotides Shewana3_2458 and Shewana3_2459 are separated by 208 nucleotides
Shewana3_2455: Shewana3_2455 - phospholipase/carboxylesterase (RefSeq), at 2,943,859 to 2,944,524
_2455
Shewana3_2456: Shewana3_2456 - hypothetical protein (RefSeq), at 2,944,577 to 2,944,846
_2456
Shewana3_2457: Shewana3_2457 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 2,945,191 to 2,947,119
_2457
Shewana3_2458: Shewana3_2458 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,947,381 to 2,947,869
_2458
Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370
_2459
Position (kb)
2945
2946
2947
2948 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2944.192 kb on + strand, within Shewana3_2455 at 2944.254 kb on + strand, within Shewana3_2455 at 2944.262 kb on - strand, within Shewana3_2455 at 2944.262 kb on - strand, within Shewana3_2455 at 2944.265 kb on + strand, within Shewana3_2455 at 2944.281 kb on - strand, within Shewana3_2455 at 2944.398 kb on - strand, within Shewana3_2455 at 2944.698 kb on - strand, within Shewana3_2456 at 2944.711 kb on - strand, within Shewana3_2456 at 2944.776 kb on + strand, within Shewana3_2456 at 2944.910 kb on + strand at 2944.910 kb on + strand at 2944.918 kb on - strand at 2944.918 kb on - strand at 2944.918 kb on - strand at 2944.995 kb on - strand at 2945.212 kb on - strand at 2945.235 kb on - strand at 2945.273 kb on - strand at 2945.573 kb on - strand, within Shewana3_2457 at 2945.573 kb on - strand, within Shewana3_2457 at 2945.611 kb on + strand, within Shewana3_2457 at 2945.723 kb on - strand, within Shewana3_2457 at 2945.807 kb on + strand, within Shewana3_2457 at 2945.828 kb on - strand, within Shewana3_2457 at 2946.384 kb on - strand, within Shewana3_2457 at 2946.489 kb on + strand, within Shewana3_2457 at 2946.750 kb on + strand, within Shewana3_2457 at 2946.758 kb on - strand, within Shewana3_2457 at 2946.758 kb on - strand, within Shewana3_2457 at 2947.014 kb on - strand at 2947.054 kb on - strand at 2947.056 kb on + strand at 2947.379 kb on + strand at 2947.379 kb on + strand at 2947.387 kb on - strand at 2947.466 kb on - strand, within Shewana3_2458 at 2947.684 kb on - strand, within Shewana3_2458 at 2947.840 kb on - strand at 2947.847 kb on + strand at 2947.922 kb on - strand at 2947.941 kb on + strand at 2948.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,944,192 + Shewana3_2455 0.50 +0.9 2,944,254 + Shewana3_2455 0.59 +6.5 2,944,262 - Shewana3_2455 0.61 -1.3 2,944,262 - Shewana3_2455 0.61 +0.1 2,944,265 + Shewana3_2455 0.61 +3.9 2,944,281 - Shewana3_2455 0.63 +0.7 2,944,398 - Shewana3_2455 0.81 +1.1 2,944,698 - Shewana3_2456 0.45 -0.2 2,944,711 - Shewana3_2456 0.50 -0.7 2,944,776 + Shewana3_2456 0.74 +1.6 2,944,910 + +2.3 2,944,910 + +1.9 2,944,918 - +1.5 2,944,918 - -0.0 2,944,918 - -0.3 2,944,995 - -0.8 2,945,212 - -0.7 2,945,235 - +2.3 2,945,273 - +1.7 2,945,573 - Shewana3_2457 0.20 -1.7 2,945,573 - Shewana3_2457 0.20 -0.2 2,945,611 + Shewana3_2457 0.22 +0.4 2,945,723 - Shewana3_2457 0.28 +1.1 2,945,807 + Shewana3_2457 0.32 +0.6 2,945,828 - Shewana3_2457 0.33 -0.6 2,946,384 - Shewana3_2457 0.62 +0.9 2,946,489 + Shewana3_2457 0.67 -1.0 2,946,750 + Shewana3_2457 0.81 +0.0 2,946,758 - Shewana3_2457 0.81 +1.3 2,946,758 - Shewana3_2457 0.81 +2.3 2,947,014 - +1.9 2,947,054 - +0.2 2,947,056 + -2.7 2,947,379 + -0.0 2,947,379 + +1.1 2,947,387 - -0.1 2,947,466 - Shewana3_2458 0.17 -0.8 2,947,684 - Shewana3_2458 0.62 -0.0 2,947,840 - +2.4 2,947,847 + +0.4 2,947,922 - +0.1 2,947,941 + -1.3 2,948,105 - -1.7
Or see this region's nucleotide sequence