Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2452

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2450 and Shewana3_2451 are separated by 144 nucleotidesShewana3_2451 and Shewana3_2452 are separated by 259 nucleotidesShewana3_2452 and Shewana3_2453 are separated by 163 nucleotidesShewana3_2453 and ushA are separated by 94 nucleotides Shewana3_2450: Shewana3_2450 - hypothetical protein (RefSeq), at 2,938,533 to 2,939,372 _2450 Shewana3_2451: Shewana3_2451 - hypothetical protein (RefSeq), at 2,939,517 to 2,939,948 _2451 Shewana3_2452: Shewana3_2452 - dihydrouridine synthase, DuS (RefSeq), at 2,940,208 to 2,941,155 _2452 Shewana3_2453: Shewana3_2453 - TraR/DksA family transcriptional regulator (RefSeq), at 2,941,319 to 2,941,678 _2453 Shewana3_2454: ushA - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor (RefSeq), at 2,941,773 to 2,943,494 ushA Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2939.345 kb on - strandat 2939.374 kb on + strandat 2939.491 kb on - strandat 2939.589 kb on + strand, within Shewana3_2451at 2939.731 kb on + strand, within Shewana3_2451at 2939.811 kb on - strand, within Shewana3_2451at 2939.900 kb on + strand, within Shewana3_2451at 2940.044 kb on + strandat 2940.364 kb on - strand, within Shewana3_2452at 2940.385 kb on - strand, within Shewana3_2452at 2940.538 kb on + strand, within Shewana3_2452at 2940.538 kb on + strand, within Shewana3_2452at 2940.560 kb on - strand, within Shewana3_2452at 2940.609 kb on + strand, within Shewana3_2452at 2940.769 kb on - strand, within Shewana3_2452at 2940.968 kb on + strand, within Shewana3_2452at 2941.027 kb on - strand, within Shewana3_2452at 2941.074 kb on + strandat 2941.172 kb on + strandat 2941.172 kb on + strandat 2941.288 kb on + strandat 2941.336 kb on - strandat 2941.443 kb on + strand, within Shewana3_2453at 2941.538 kb on + strand, within Shewana3_2453at 2941.610 kb on - strand, within Shewana3_2453at 2941.787 kb on + strandat 2941.830 kb on + strandat 2941.956 kb on + strand, within ushAat 2942.069 kb on + strand, within ushA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,939,345 - +1.6
2,939,374 + +0.7
2,939,491 - -1.2
2,939,589 + Shewana3_2451 0.17 -0.9
2,939,731 + Shewana3_2451 0.50 +1.6
2,939,811 - Shewana3_2451 0.68 +0.2
2,939,900 + Shewana3_2451 0.89 +2.8
2,940,044 + +3.9
2,940,364 - Shewana3_2452 0.16 +1.1
2,940,385 - Shewana3_2452 0.19 +3.9
2,940,538 + Shewana3_2452 0.35 -0.7
2,940,538 + Shewana3_2452 0.35 -0.8
2,940,560 - Shewana3_2452 0.37 +0.6
2,940,609 + Shewana3_2452 0.42 -0.5
2,940,769 - Shewana3_2452 0.59 +0.0
2,940,968 + Shewana3_2452 0.80 +1.7
2,941,027 - Shewana3_2452 0.86 -1.9
2,941,074 + -0.1
2,941,172 + +0.5
2,941,172 + +3.4
2,941,288 + +0.1
2,941,336 - +1.6
2,941,443 + Shewana3_2453 0.34 +3.1
2,941,538 + Shewana3_2453 0.61 -1.2
2,941,610 - Shewana3_2453 0.81 +1.1
2,941,787 + +2.4
2,941,830 + -0.2
2,941,956 + ushA Shewana3_2454 0.11 +1.4
2,942,069 + ushA Shewana3_2454 0.17 +3.9

Or see this region's nucleotide sequence