Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2435 and Shewana3_2436 overlap by 4 nucleotides Shewana3_2436 and Shewana3_2437 are separated by 164 nucleotides Shewana3_2437 and nadE are separated by 166 nucleotides
Shewana3_2435: Shewana3_2435 - diguanylate cyclase (RefSeq), at 2,919,485 to 2,921,665
_2435
Shewana3_2436: Shewana3_2436 - hypothetical protein (RefSeq), at 2,921,662 to 2,923,128
_2436
Shewana3_2437: Shewana3_2437 - hypothetical protein (RefSeq), at 2,923,293 to 2,923,814
_2437
Shewana3_2438: nadE - NAD synthetase (RefSeq), at 2,923,981 to 2,924,871
nadE
Position (kb)
2921
2922
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2920.683 kb on + strand, within Shewana3_2435 at 2920.814 kb on + strand, within Shewana3_2435 at 2920.861 kb on - strand, within Shewana3_2435 at 2921.043 kb on + strand, within Shewana3_2435 at 2921.102 kb on + strand, within Shewana3_2435 at 2921.304 kb on - strand, within Shewana3_2435 at 2921.522 kb on - strand at 2921.530 kb on + strand at 2921.540 kb on - strand at 2921.691 kb on + strand at 2921.871 kb on - strand, within Shewana3_2436 at 2921.893 kb on - strand, within Shewana3_2436 at 2922.027 kb on - strand, within Shewana3_2436 at 2922.029 kb on + strand, within Shewana3_2436 at 2922.240 kb on + strand, within Shewana3_2436 at 2922.248 kb on - strand, within Shewana3_2436 at 2922.286 kb on - strand, within Shewana3_2436 at 2922.500 kb on - strand, within Shewana3_2436 at 2922.600 kb on - strand, within Shewana3_2436 at 2922.663 kb on + strand, within Shewana3_2436 at 2922.671 kb on - strand, within Shewana3_2436 at 2922.781 kb on - strand, within Shewana3_2436 at 2923.376 kb on + strand, within Shewana3_2437 at 2923.474 kb on - strand, within Shewana3_2437 at 2923.547 kb on + strand, within Shewana3_2437 at 2923.721 kb on - strand, within Shewana3_2437 at 2923.723 kb on + strand, within Shewana3_2437 at 2923.733 kb on - strand, within Shewana3_2437 at 2923.808 kb on + strand at 2923.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,920,683 + Shewana3_2435 0.55 +2.0 2,920,814 + Shewana3_2435 0.61 +4.0 2,920,861 - Shewana3_2435 0.63 +2.4 2,921,043 + Shewana3_2435 0.71 +1.4 2,921,102 + Shewana3_2435 0.74 +1.0 2,921,304 - Shewana3_2435 0.83 +0.3 2,921,522 - +0.5 2,921,530 + +1.1 2,921,540 - +1.0 2,921,691 + -0.9 2,921,871 - Shewana3_2436 0.14 +3.0 2,921,893 - Shewana3_2436 0.16 -2.4 2,922,027 - Shewana3_2436 0.25 +1.0 2,922,029 + Shewana3_2436 0.25 +3.0 2,922,240 + Shewana3_2436 0.39 +0.1 2,922,248 - Shewana3_2436 0.40 +0.3 2,922,286 - Shewana3_2436 0.43 +1.6 2,922,500 - Shewana3_2436 0.57 -1.3 2,922,600 - Shewana3_2436 0.64 -1.1 2,922,663 + Shewana3_2436 0.68 +4.0 2,922,671 - Shewana3_2436 0.69 +0.3 2,922,781 - Shewana3_2436 0.76 -0.4 2,923,376 + Shewana3_2437 0.16 +1.4 2,923,474 - Shewana3_2437 0.35 +3.0 2,923,547 + Shewana3_2437 0.49 +1.4 2,923,721 - Shewana3_2437 0.82 +0.8 2,923,723 + Shewana3_2437 0.82 +1.1 2,923,733 - Shewana3_2437 0.84 +1.6 2,923,808 + -2.4 2,923,881 - +2.0
Or see this region's nucleotide sequence