Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2428 and Shewana3_2429 are separated by 138 nucleotides Shewana3_2429 and Shewana3_2430 are separated by 100 nucleotides
Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173
_2428
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391
_2430
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.503 kb on + strand, within Shewana3_2428 at 2911.511 kb on - strand, within Shewana3_2428 at 2911.731 kb on + strand, within Shewana3_2428 at 2911.949 kb on - strand, within Shewana3_2428 at 2912.063 kb on + strand at 2912.221 kb on + strand at 2912.409 kb on - strand at 2912.409 kb on - strand at 2912.519 kb on - strand, within Shewana3_2429 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429 at 2913.176 kb on + strand, within Shewana3_2429 at 2913.208 kb on + strand, within Shewana3_2429 at 2913.732 kb on + strand, within Shewana3_2430 at 2913.828 kb on - strand, within Shewana3_2430 at 2913.862 kb on - strand, within Shewana3_2430 at 2913.958 kb on + strand, within Shewana3_2430 at 2914.136 kb on - strand, within Shewana3_2430 at 2914.184 kb on - strand, within Shewana3_2430 at 2914.266 kb on + strand, within Shewana3_2430
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,911,362 + Shewana3_2428 0.55 +2.4 2,911,362 + Shewana3_2428 0.55 +3.0 2,911,503 + Shewana3_2428 0.63 -0.4 2,911,511 - Shewana3_2428 0.63 +0.4 2,911,731 + Shewana3_2428 0.75 -0.4 2,911,949 - Shewana3_2428 0.87 +2.0 2,912,063 + -0.3 2,912,221 + -1.2 2,912,409 - +0.5 2,912,409 - +0.6 2,912,519 - Shewana3_2429 0.19 -0.8 2,912,698 + Shewana3_2429 0.35 +2.4 2,912,700 - Shewana3_2429 0.35 +1.7 2,912,706 - Shewana3_2429 0.35 +0.1 2,912,706 - Shewana3_2429 0.35 +1.6 2,912,766 - Shewana3_2429 0.41 -0.2 2,912,942 - Shewana3_2429 0.57 -0.1 2,913,018 - Shewana3_2429 0.63 +0.1 2,913,176 + Shewana3_2429 0.78 +4.2 2,913,208 + Shewana3_2429 0.81 +2.0 2,913,732 + Shewana3_2430 0.24 +1.5 2,913,828 - Shewana3_2430 0.35 +1.4 2,913,862 - Shewana3_2430 0.39 +0.6 2,913,958 + Shewana3_2430 0.50 -0.0 2,914,136 - Shewana3_2430 0.70 +0.6 2,914,184 - Shewana3_2430 0.76 +0.6 2,914,266 + Shewana3_2430 0.85 +2.4
Or see this region's nucleotide sequence