Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2429

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2428 and Shewana3_2429 are separated by 138 nucleotidesShewana3_2429 and Shewana3_2430 are separated by 100 nucleotides Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173 _2428 Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424 _2429 Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391 _2430 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -1 0 1 2 3 4at 2911.362 kb on + strand, within Shewana3_2428at 2911.362 kb on + strand, within Shewana3_2428at 2911.503 kb on + strand, within Shewana3_2428at 2911.511 kb on - strand, within Shewana3_2428at 2911.731 kb on + strand, within Shewana3_2428at 2911.949 kb on - strand, within Shewana3_2428at 2912.063 kb on + strandat 2912.221 kb on + strandat 2912.409 kb on - strandat 2912.409 kb on - strandat 2912.519 kb on - strand, within Shewana3_2429at 2912.698 kb on + strand, within Shewana3_2429at 2912.700 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.766 kb on - strand, within Shewana3_2429at 2912.942 kb on - strand, within Shewana3_2429at 2913.018 kb on - strand, within Shewana3_2429at 2913.176 kb on + strand, within Shewana3_2429at 2913.208 kb on + strand, within Shewana3_2429at 2913.732 kb on + strand, within Shewana3_2430at 2913.828 kb on - strand, within Shewana3_2430at 2913.862 kb on - strand, within Shewana3_2430at 2913.958 kb on + strand, within Shewana3_2430at 2914.136 kb on - strand, within Shewana3_2430at 2914.184 kb on - strand, within Shewana3_2430at 2914.266 kb on + strand, within Shewana3_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,911,362 + Shewana3_2428 0.55 +2.4
2,911,362 + Shewana3_2428 0.55 +3.0
2,911,503 + Shewana3_2428 0.63 -0.4
2,911,511 - Shewana3_2428 0.63 +0.4
2,911,731 + Shewana3_2428 0.75 -0.4
2,911,949 - Shewana3_2428 0.87 +2.0
2,912,063 + -0.3
2,912,221 + -1.2
2,912,409 - +0.5
2,912,409 - +0.6
2,912,519 - Shewana3_2429 0.19 -0.8
2,912,698 + Shewana3_2429 0.35 +2.4
2,912,700 - Shewana3_2429 0.35 +1.7
2,912,706 - Shewana3_2429 0.35 +0.1
2,912,706 - Shewana3_2429 0.35 +1.6
2,912,766 - Shewana3_2429 0.41 -0.2
2,912,942 - Shewana3_2429 0.57 -0.1
2,913,018 - Shewana3_2429 0.63 +0.1
2,913,176 + Shewana3_2429 0.78 +4.2
2,913,208 + Shewana3_2429 0.81 +2.0
2,913,732 + Shewana3_2430 0.24 +1.5
2,913,828 - Shewana3_2430 0.35 +1.4
2,913,862 - Shewana3_2430 0.39 +0.6
2,913,958 + Shewana3_2430 0.50 -0.0
2,914,136 - Shewana3_2430 0.70 +0.6
2,914,184 - Shewana3_2430 0.76 +0.6
2,914,266 + Shewana3_2430 0.85 +2.4

Or see this region's nucleotide sequence