Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2424 and Shewana3_2425 are separated by 580 nucleotides Shewana3_2425 and Shewana3_2426 are separated by 138 nucleotides
Shewana3_2424: Shewana3_2424 - isocitrate dehydrogenase (NADP(+)) (RefSeq), at 2,906,396 to 2,907,271
_2424
Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853
_2425
Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020
_2426
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2906.863 kb on + strand, within Shewana3_2424 at 2906.892 kb on + strand, within Shewana3_2424 at 2906.966 kb on + strand, within Shewana3_2424 at 2906.995 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.109 kb on + strand, within Shewana3_2424 at 2907.165 kb on - strand, within Shewana3_2424 at 2907.342 kb on + strand at 2907.406 kb on - strand at 2907.595 kb on - strand at 2907.636 kb on + strand at 2907.888 kb on - strand at 2908.123 kb on - strand, within Shewana3_2425 at 2908.180 kb on + strand, within Shewana3_2425 at 2908.292 kb on + strand, within Shewana3_2425 at 2908.420 kb on - strand, within Shewana3_2425 at 2908.537 kb on + strand, within Shewana3_2425 at 2908.537 kb on + strand, within Shewana3_2425 at 2908.546 kb on - strand, within Shewana3_2425 at 2908.548 kb on + strand, within Shewana3_2425 at 2908.613 kb on + strand, within Shewana3_2425 at 2909.156 kb on + strand, within Shewana3_2426 at 2909.329 kb on - strand, within Shewana3_2426 at 2909.384 kb on - strand, within Shewana3_2426 at 2909.424 kb on - strand, within Shewana3_2426 at 2909.821 kb on + strand, within Shewana3_2426
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,906,863 + Shewana3_2424 0.53 +2.4 2,906,892 + Shewana3_2424 0.57 +4.0 2,906,966 + Shewana3_2424 0.65 +4.0 2,906,995 - Shewana3_2424 0.68 -1.1 2,907,016 - Shewana3_2424 0.71 -0.0 2,907,016 - Shewana3_2424 0.71 -0.5 2,907,109 + Shewana3_2424 0.81 +3.0 2,907,165 - Shewana3_2424 0.88 +2.0 2,907,342 + +3.0 2,907,406 - -0.3 2,907,595 - +0.4 2,907,636 + +1.4 2,907,888 - -0.3 2,908,123 - Shewana3_2425 0.27 -0.8 2,908,180 + Shewana3_2425 0.33 +0.1 2,908,292 + Shewana3_2425 0.44 +3.0 2,908,420 - Shewana3_2425 0.57 -1.5 2,908,537 + Shewana3_2425 0.68 +1.0 2,908,537 + Shewana3_2425 0.68 -2.3 2,908,546 - Shewana3_2425 0.69 +0.3 2,908,548 + Shewana3_2425 0.69 -0.1 2,908,613 + Shewana3_2425 0.76 +0.1 2,909,156 + Shewana3_2426 0.16 +4.0 2,909,329 - Shewana3_2426 0.33 +0.7 2,909,384 - Shewana3_2426 0.38 +0.4 2,909,424 - Shewana3_2426 0.42 +1.0 2,909,821 + Shewana3_2426 0.81 +1.6
Or see this region's nucleotide sequence