Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2420

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2419 and Shewana3_2420 are separated by 112 nucleotidesShewana3_2420 and Shewana3_2421 are separated by 81 nucleotidesShewana3_2421 and Shewana3_2422 are separated by 235 nucleotides Shewana3_2419: Shewana3_2419 - Ion transport protein (RefSeq), at 2,902,599 to 2,903,468 _2419 Shewana3_2420: Shewana3_2420 - hypothetical protein (RefSeq), at 2,903,581 to 2,904,141 _2420 Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831 _2421 Shewana3_2422: Shewana3_2422 - hypothetical protein (RefSeq), at 2,905,067 to 2,905,327 _2422 Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -2 -1 0 1 2at 2902.891 kb on + strand, within Shewana3_2419at 2903.017 kb on + strand, within Shewana3_2419at 2903.039 kb on + strand, within Shewana3_2419at 2903.130 kb on - strand, within Shewana3_2419at 2903.219 kb on + strand, within Shewana3_2419at 2903.227 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.347 kb on - strand, within Shewana3_2419at 2903.638 kb on - strand, within Shewana3_2420at 2903.661 kb on + strand, within Shewana3_2420at 2904.018 kb on + strand, within Shewana3_2420at 2904.023 kb on + strand, within Shewana3_2420at 2904.468 kb on - strand, within Shewana3_2421at 2904.542 kb on + strand, within Shewana3_2421at 2904.608 kb on - strand, within Shewana3_2421at 2904.722 kb on - strand, within Shewana3_2421at 2904.797 kb on + strandat 2904.868 kb on - strandat 2904.876 kb on - strandat 2904.968 kb on + strandat 2905.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,902,891 + Shewana3_2419 0.34 +2.0
2,903,017 + Shewana3_2419 0.48 +0.3
2,903,039 + Shewana3_2419 0.51 +2.0
2,903,130 - Shewana3_2419 0.61 -0.3
2,903,219 + Shewana3_2419 0.71 +2.0
2,903,227 - Shewana3_2419 0.72 +0.2
2,903,347 - Shewana3_2419 0.86 -0.8
2,903,347 - Shewana3_2419 0.86 +0.2
2,903,347 - Shewana3_2419 0.86 +0.8
2,903,638 - Shewana3_2420 0.10 +0.8
2,903,661 + Shewana3_2420 0.14 -0.1
2,904,018 + Shewana3_2420 0.78 -2.1
2,904,023 + Shewana3_2420 0.79 -1.3
2,904,468 - Shewana3_2421 0.40 -0.3
2,904,542 + Shewana3_2421 0.52 +0.7
2,904,608 - Shewana3_2421 0.63 +0.5
2,904,722 - Shewana3_2421 0.82 -0.7
2,904,797 + +1.0
2,904,868 - +1.5
2,904,876 - +1.0
2,904,968 + -1.4
2,905,036 + +0.8

Or see this region's nucleotide sequence