Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2420
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,902,891 | + | Shewana3_2419 | 0.34 | +2.0 | |
2,903,017 | + | Shewana3_2419 | 0.48 | +0.3 | |
2,903,039 | + | Shewana3_2419 | 0.51 | +2.0 | |
2,903,130 | - | Shewana3_2419 | 0.61 | -0.3 | |
2,903,219 | + | Shewana3_2419 | 0.71 | +2.0 | |
2,903,227 | - | Shewana3_2419 | 0.72 | +0.2 | |
2,903,347 | - | Shewana3_2419 | 0.86 | -0.8 | |
2,903,347 | - | Shewana3_2419 | 0.86 | +0.2 | |
2,903,347 | - | Shewana3_2419 | 0.86 | +0.8 | |
2,903,638 | - | Shewana3_2420 | 0.10 | +0.8 | |
2,903,661 | + | Shewana3_2420 | 0.14 | -0.1 | |
2,904,018 | + | Shewana3_2420 | 0.78 | -2.1 | |
2,904,023 | + | Shewana3_2420 | 0.79 | -1.3 | |
2,904,468 | - | Shewana3_2421 | 0.40 | -0.3 | |
2,904,542 | + | Shewana3_2421 | 0.52 | +0.7 | |
2,904,608 | - | Shewana3_2421 | 0.63 | +0.5 | |
2,904,722 | - | Shewana3_2421 | 0.82 | -0.7 | |
2,904,797 | + | +1.0 | |||
2,904,868 | - | +1.5 | |||
2,904,876 | - | +1.0 | |||
2,904,968 | + | -1.4 | |||
2,905,036 | + | +0.8 |
Or see this region's nucleotide sequence