Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2403 and Shewana3_2404 are separated by 108 nucleotides Shewana3_2404 and Shewana3_2405 are separated by 20 nucleotides Shewana3_2405 and Shewana3_2406 are separated by 239 nucleotides
Shewana3_2403: Shewana3_2403 - LysR family transcriptional regulator (RefSeq), at 2,881,382 to 2,882,239
_2403
Shewana3_2404: Shewana3_2404 - hypothetical protein (RefSeq), at 2,882,348 to 2,882,800
_2404
Shewana3_2405: Shewana3_2405 - alpha-L-glutamate ligase (RefSeq), at 2,882,821 to 2,883,837
_2405
Shewana3_2406: Shewana3_2406 - hypothetical protein (RefSeq), at 2,884,077 to 2,885,000
_2406
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2882.020 kb on - strand, within Shewana3_2403 at 2882.216 kb on + strand at 2882.511 kb on - strand, within Shewana3_2404 at 2882.634 kb on + strand, within Shewana3_2404 at 2882.642 kb on - strand, within Shewana3_2404 at 2882.696 kb on - strand, within Shewana3_2404 at 2882.704 kb on + strand, within Shewana3_2404 at 2882.712 kb on - strand, within Shewana3_2404 at 2882.718 kb on - strand, within Shewana3_2404 at 2882.909 kb on - strand at 2883.002 kb on - strand, within Shewana3_2405 at 2883.101 kb on + strand, within Shewana3_2405 at 2883.299 kb on + strand, within Shewana3_2405 at 2883.378 kb on + strand, within Shewana3_2405 at 2883.770 kb on - strand at 2884.183 kb on + strand, within Shewana3_2406 at 2884.254 kb on - strand, within Shewana3_2406 at 2884.367 kb on + strand, within Shewana3_2406 at 2884.474 kb on - strand at 2884.492 kb on - strand, within Shewana3_2406 at 2884.528 kb on - strand, within Shewana3_2406 at 2884.572 kb on - strand, within Shewana3_2406 at 2884.603 kb on + strand, within Shewana3_2406 at 2884.819 kb on + strand, within Shewana3_2406
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,882,020 - Shewana3_2403 0.74 -1.1 2,882,216 + +3.0 2,882,511 - Shewana3_2404 0.36 -1.4 2,882,634 + Shewana3_2404 0.63 -0.7 2,882,642 - Shewana3_2404 0.65 -0.9 2,882,696 - Shewana3_2404 0.77 -1.3 2,882,704 + Shewana3_2404 0.79 -0.1 2,882,712 - Shewana3_2404 0.80 +0.8 2,882,718 - Shewana3_2404 0.82 +0.1 2,882,909 - +2.0 2,883,002 - Shewana3_2405 0.18 -0.2 2,883,101 + Shewana3_2405 0.28 -2.2 2,883,299 + Shewana3_2405 0.47 +0.0 2,883,378 + Shewana3_2405 0.55 +2.9 2,883,770 - +0.3 2,884,183 + Shewana3_2406 0.11 +3.0 2,884,254 - Shewana3_2406 0.19 +2.4 2,884,367 + Shewana3_2406 0.31 -0.3 2,884,474 - +4.0 2,884,492 - Shewana3_2406 0.45 +2.0 2,884,528 - Shewana3_2406 0.49 +0.5 2,884,572 - Shewana3_2406 0.54 -0.0 2,884,603 + Shewana3_2406 0.57 +0.2 2,884,819 + Shewana3_2406 0.80 -0.0
Or see this region's nucleotide sequence