Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2377

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2376 and Shewana3_2377 are separated by 45 nucleotidesShewana3_2377 and Shewana3_2378 are separated by 190 nucleotides Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363 _2376 Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909 _2377 Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713 _2378 Position (kb) 2857 2858Strain fitness (log2 ratio) -2 -1 0 1 2at 2856.720 kb on + strand, within Shewana3_2376at 2856.818 kb on + strand, within Shewana3_2376at 2856.949 kb on + strand, within Shewana3_2376at 2857.151 kb on - strand, within Shewana3_2376at 2857.274 kb on - strandat 2857.544 kb on + strand, within Shewana3_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,856,720 + Shewana3_2376 0.56 +2.0
2,856,818 + Shewana3_2376 0.63 +0.2
2,856,949 + Shewana3_2376 0.72 +0.8
2,857,151 - Shewana3_2376 0.86 +2.0
2,857,274 - +0.3
2,857,544 + Shewana3_2377 0.27 -1.9

Or see this region's nucleotide sequence