Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2375 and Shewana3_2376 are separated by 311 nucleotides Shewana3_2376 and Shewana3_2377 are separated by 45 nucleotides Shewana3_2377 and Shewana3_2378 are separated by 190 nucleotides
Shewana3_2375: Shewana3_2375 - putative lipoprotein (RefSeq), at 2,853,786 to 2,855,576
_2375
Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363
_2376
Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909
_2377
Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713
_2378
Position (kb)
2855
2856
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2855.006 kb on + strand, within Shewana3_2375 at 2855.006 kb on + strand, within Shewana3_2375 at 2855.014 kb on - strand, within Shewana3_2375 at 2855.026 kb on + strand, within Shewana3_2375 at 2855.026 kb on + strand, within Shewana3_2375 at 2855.373 kb on + strand, within Shewana3_2375 at 2855.704 kb on + strand at 2855.847 kb on + strand at 2855.847 kb on + strand at 2855.855 kb on - strand at 2855.952 kb on - strand at 2855.979 kb on - strand at 2856.056 kb on - strand, within Shewana3_2376 at 2856.285 kb on - strand, within Shewana3_2376 at 2856.369 kb on + strand, within Shewana3_2376 at 2856.720 kb on + strand, within Shewana3_2376 at 2856.818 kb on + strand, within Shewana3_2376 at 2856.949 kb on + strand, within Shewana3_2376 at 2857.151 kb on - strand, within Shewana3_2376 at 2857.274 kb on - strand at 2857.544 kb on + strand, within Shewana3_2377
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,855,006 + Shewana3_2375 0.68 +2.0 2,855,006 + Shewana3_2375 0.68 -1.3 2,855,014 - Shewana3_2375 0.69 -0.0 2,855,026 + Shewana3_2375 0.69 +0.7 2,855,026 + Shewana3_2375 0.69 +0.8 2,855,373 + Shewana3_2375 0.89 +3.0 2,855,704 + -0.2 2,855,847 + +2.0 2,855,847 + +1.7 2,855,855 - +2.4 2,855,952 - +1.2 2,855,979 - +3.0 2,856,056 - Shewana3_2376 0.11 +0.7 2,856,285 - Shewana3_2376 0.27 +1.5 2,856,369 + Shewana3_2376 0.33 +0.1 2,856,720 + Shewana3_2376 0.56 +2.0 2,856,818 + Shewana3_2376 0.63 +0.2 2,856,949 + Shewana3_2376 0.72 +0.8 2,857,151 - Shewana3_2376 0.86 +2.0 2,857,274 - +0.3 2,857,544 + Shewana3_2377 0.27 -1.9
Or see this region's nucleotide sequence