Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2300

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2299 and Shewana3_2300 are separated by 55 nucleotidesShewana3_2300 and Shewana3_2301 are separated by 137 nucleotides Shewana3_2299: Shewana3_2299 - hypothetical protein (RefSeq), at 2,762,417 to 2,763,352 _2299 Shewana3_2300: Shewana3_2300 - GCN5-related N-acetyltransferase (RefSeq), at 2,763,408 to 2,763,866 _2300 Shewana3_2301: Shewana3_2301 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,764,004 to 2,766,067 _2301 Position (kb) 2763 2764Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2762.440 kb on + strandat 2762.553 kb on - strand, within Shewana3_2299at 2762.667 kb on - strand, within Shewana3_2299at 2762.782 kb on - strand, within Shewana3_2299at 2762.856 kb on + strand, within Shewana3_2299at 2762.885 kb on + strand, within Shewana3_2299at 2763.599 kb on - strand, within Shewana3_2300at 2763.637 kb on + strand, within Shewana3_2300at 2763.645 kb on - strand, within Shewana3_2300at 2763.705 kb on + strand, within Shewana3_2300at 2763.713 kb on - strand, within Shewana3_2300at 2763.770 kb on + strand, within Shewana3_2300at 2763.773 kb on - strand, within Shewana3_2300at 2763.780 kb on + strand, within Shewana3_2300at 2763.783 kb on - strand, within Shewana3_2300at 2763.807 kb on - strand, within Shewana3_2300at 2764.435 kb on - strand, within Shewana3_2301at 2764.616 kb on - strand, within Shewana3_2301at 2764.643 kb on - strand, within Shewana3_2301at 2764.667 kb on + strand, within Shewana3_2301at 2764.840 kb on - strand, within Shewana3_2301

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,762,440 + +0.3
2,762,553 - Shewana3_2299 0.15 -2.1
2,762,667 - Shewana3_2299 0.27 -0.5
2,762,782 - Shewana3_2299 0.39 +1.7
2,762,856 + Shewana3_2299 0.47 +3.0
2,762,885 + Shewana3_2299 0.50 +2.4
2,763,599 - Shewana3_2300 0.42 -1.1
2,763,637 + Shewana3_2300 0.50 -0.6
2,763,645 - Shewana3_2300 0.52 -1.0
2,763,705 + Shewana3_2300 0.65 -0.1
2,763,713 - Shewana3_2300 0.66 -2.3
2,763,770 + Shewana3_2300 0.79 -0.9
2,763,773 - Shewana3_2300 0.80 +0.0
2,763,780 + Shewana3_2300 0.81 +1.2
2,763,783 - Shewana3_2300 0.82 -2.0
2,763,807 - Shewana3_2300 0.87 +2.1
2,764,435 - Shewana3_2301 0.21 -1.3
2,764,616 - Shewana3_2301 0.30 -1.3
2,764,643 - Shewana3_2301 0.31 +0.8
2,764,667 + Shewana3_2301 0.32 +0.1
2,764,840 - Shewana3_2301 0.41 -2.0

Or see this region's nucleotide sequence