Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2300
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,762,440 | + | +0.3 | |||
2,762,553 | - | Shewana3_2299 | 0.15 | -2.1 | |
2,762,667 | - | Shewana3_2299 | 0.27 | -0.5 | |
2,762,782 | - | Shewana3_2299 | 0.39 | +1.7 | |
2,762,856 | + | Shewana3_2299 | 0.47 | +3.0 | |
2,762,885 | + | Shewana3_2299 | 0.50 | +2.4 | |
2,763,599 | - | Shewana3_2300 | 0.42 | -1.1 | |
2,763,637 | + | Shewana3_2300 | 0.50 | -0.6 | |
2,763,645 | - | Shewana3_2300 | 0.52 | -1.0 | |
2,763,705 | + | Shewana3_2300 | 0.65 | -0.1 | |
2,763,713 | - | Shewana3_2300 | 0.66 | -2.3 | |
2,763,770 | + | Shewana3_2300 | 0.79 | -0.9 | |
2,763,773 | - | Shewana3_2300 | 0.80 | +0.0 | |
2,763,780 | + | Shewana3_2300 | 0.81 | +1.2 | |
2,763,783 | - | Shewana3_2300 | 0.82 | -2.0 | |
2,763,807 | - | Shewana3_2300 | 0.87 | +2.1 | |
2,764,435 | - | Shewana3_2301 | 0.21 | -1.3 | |
2,764,616 | - | Shewana3_2301 | 0.30 | -1.3 | |
2,764,643 | - | Shewana3_2301 | 0.31 | +0.8 | |
2,764,667 | + | Shewana3_2301 | 0.32 | +0.1 | |
2,764,840 | - | Shewana3_2301 | 0.41 | -2.0 |
Or see this region's nucleotide sequence