Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2287 and Shewana3_2288 are separated by 94 nucleotides Shewana3_2288 and Shewana3_2289 are separated by 86 nucleotides Shewana3_2289 and Shewana3_2290 overlap by 1 nucleotides
Shewana3_2287: Shewana3_2287 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 2,748,891 to 2,750,123
_2287
Shewana3_2288: Shewana3_2288 - hypothetical protein (RefSeq), at 2,750,218 to 2,750,838
_2288
Shewana3_2289: Shewana3_2289 - transcription-repair coupling factor (RefSeq), at 2,750,925 to 2,754,407
_2289
Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432
_2290
Position (kb)
2750
2751
2752
2753
2754
2755 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2750.215 kb on + strand at 2750.251 kb on + strand at 2750.278 kb on - strand at 2750.459 kb on + strand, within Shewana3_2288 at 2750.464 kb on + strand, within Shewana3_2288 at 2750.637 kb on + strand, within Shewana3_2288 at 2750.648 kb on + strand, within Shewana3_2288 at 2751.014 kb on - strand at 2751.078 kb on - strand at 2751.392 kb on - strand, within Shewana3_2289 at 2751.763 kb on - strand, within Shewana3_2289 at 2751.941 kb on + strand, within Shewana3_2289 at 2751.990 kb on + strand, within Shewana3_2289 at 2751.990 kb on + strand, within Shewana3_2289 at 2751.990 kb on + strand, within Shewana3_2289 at 2752.064 kb on + strand, within Shewana3_2289 at 2752.420 kb on + strand, within Shewana3_2289 at 2752.522 kb on + strand, within Shewana3_2289 at 2753.091 kb on - strand, within Shewana3_2289 at 2753.310 kb on + strand, within Shewana3_2289 at 2753.660 kb on + strand, within Shewana3_2289 at 2753.828 kb on - strand, within Shewana3_2289 at 2754.103 kb on + strand at 2754.336 kb on + strand at 2754.407 kb on + strand at 2754.853 kb on - strand, within Shewana3_2290 at 2754.863 kb on + strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2754.871 kb on - strand, within Shewana3_2290 at 2755.164 kb on + strand, within Shewana3_2290 at 2755.256 kb on + strand, within Shewana3_2290 at 2755.258 kb on + strand, within Shewana3_2290 at 2755.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,750,215 + +0.2 2,750,251 + -0.7 2,750,278 - -0.8 2,750,459 + Shewana3_2288 0.39 +1.0 2,750,464 + Shewana3_2288 0.40 -1.2 2,750,637 + Shewana3_2288 0.67 +0.7 2,750,648 + Shewana3_2288 0.69 +0.8 2,751,014 - -0.5 2,751,078 - +0.5 2,751,392 - Shewana3_2289 0.13 +0.1 2,751,763 - Shewana3_2289 0.24 -1.4 2,751,941 + Shewana3_2289 0.29 +1.4 2,751,990 + Shewana3_2289 0.31 +0.1 2,751,990 + Shewana3_2289 0.31 -1.3 2,751,990 + Shewana3_2289 0.31 +0.8 2,752,064 + Shewana3_2289 0.33 -0.1 2,752,420 + Shewana3_2289 0.43 +1.7 2,752,522 + Shewana3_2289 0.46 +1.4 2,753,091 - Shewana3_2289 0.62 +0.2 2,753,310 + Shewana3_2289 0.68 -2.5 2,753,660 + Shewana3_2289 0.79 +0.3 2,753,828 - Shewana3_2289 0.83 -0.7 2,754,103 + -0.5 2,754,336 + -0.0 2,754,407 + +2.4 2,754,853 - Shewana3_2290 0.43 +3.0 2,754,863 + Shewana3_2290 0.44 -0.7 2,754,871 - Shewana3_2290 0.45 +3.0 2,754,871 - Shewana3_2290 0.45 +4.0 2,755,164 + Shewana3_2290 0.74 +1.4 2,755,256 + Shewana3_2290 0.83 +0.9 2,755,258 + Shewana3_2290 0.83 +1.2 2,755,368 + +0.3
Or see this region's nucleotide sequence