Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2289

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2287 and Shewana3_2288 are separated by 94 nucleotidesShewana3_2288 and Shewana3_2289 are separated by 86 nucleotidesShewana3_2289 and Shewana3_2290 overlap by 1 nucleotides Shewana3_2287: Shewana3_2287 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 2,748,891 to 2,750,123 _2287 Shewana3_2288: Shewana3_2288 - hypothetical protein (RefSeq), at 2,750,218 to 2,750,838 _2288 Shewana3_2289: Shewana3_2289 - transcription-repair coupling factor (RefSeq), at 2,750,925 to 2,754,407 _2289 Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432 _2290 Position (kb) 2750 2751 2752 2753 2754 2755Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2750.215 kb on + strandat 2750.251 kb on + strandat 2750.278 kb on - strandat 2750.459 kb on + strand, within Shewana3_2288at 2750.464 kb on + strand, within Shewana3_2288at 2750.637 kb on + strand, within Shewana3_2288at 2750.648 kb on + strand, within Shewana3_2288at 2751.014 kb on - strandat 2751.078 kb on - strandat 2751.392 kb on - strand, within Shewana3_2289at 2751.763 kb on - strand, within Shewana3_2289at 2751.941 kb on + strand, within Shewana3_2289at 2751.990 kb on + strand, within Shewana3_2289at 2751.990 kb on + strand, within Shewana3_2289at 2751.990 kb on + strand, within Shewana3_2289at 2752.064 kb on + strand, within Shewana3_2289at 2752.420 kb on + strand, within Shewana3_2289at 2752.522 kb on + strand, within Shewana3_2289at 2753.091 kb on - strand, within Shewana3_2289at 2753.310 kb on + strand, within Shewana3_2289at 2753.660 kb on + strand, within Shewana3_2289at 2753.828 kb on - strand, within Shewana3_2289at 2754.103 kb on + strandat 2754.336 kb on + strandat 2754.407 kb on + strandat 2754.853 kb on - strand, within Shewana3_2290at 2754.863 kb on + strand, within Shewana3_2290at 2754.871 kb on - strand, within Shewana3_2290at 2754.871 kb on - strand, within Shewana3_2290at 2755.164 kb on + strand, within Shewana3_2290at 2755.256 kb on + strand, within Shewana3_2290at 2755.258 kb on + strand, within Shewana3_2290at 2755.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,750,215 + +0.2
2,750,251 + -0.7
2,750,278 - -0.8
2,750,459 + Shewana3_2288 0.39 +1.0
2,750,464 + Shewana3_2288 0.40 -1.2
2,750,637 + Shewana3_2288 0.67 +0.7
2,750,648 + Shewana3_2288 0.69 +0.8
2,751,014 - -0.5
2,751,078 - +0.5
2,751,392 - Shewana3_2289 0.13 +0.1
2,751,763 - Shewana3_2289 0.24 -1.4
2,751,941 + Shewana3_2289 0.29 +1.4
2,751,990 + Shewana3_2289 0.31 +0.1
2,751,990 + Shewana3_2289 0.31 -1.3
2,751,990 + Shewana3_2289 0.31 +0.8
2,752,064 + Shewana3_2289 0.33 -0.1
2,752,420 + Shewana3_2289 0.43 +1.7
2,752,522 + Shewana3_2289 0.46 +1.4
2,753,091 - Shewana3_2289 0.62 +0.2
2,753,310 + Shewana3_2289 0.68 -2.5
2,753,660 + Shewana3_2289 0.79 +0.3
2,753,828 - Shewana3_2289 0.83 -0.7
2,754,103 + -0.5
2,754,336 + -0.0
2,754,407 + +2.4
2,754,853 - Shewana3_2290 0.43 +3.0
2,754,863 + Shewana3_2290 0.44 -0.7
2,754,871 - Shewana3_2290 0.45 +3.0
2,754,871 - Shewana3_2290 0.45 +4.0
2,755,164 + Shewana3_2290 0.74 +1.4
2,755,256 + Shewana3_2290 0.83 +0.9
2,755,258 + Shewana3_2290 0.83 +1.2
2,755,368 + +0.3

Or see this region's nucleotide sequence