Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2283

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2282 and Shewana3_2283 are separated by 45 nucleotidesShewana3_2283 and Shewana3_2284 are separated by 154 nucleotides Shewana3_2282: Shewana3_2282 - serine O-acetyltransferase (RefSeq), at 2,744,161 to 2,744,982 _2282 Shewana3_2283: Shewana3_2283 - RNA methyltransferase (RefSeq), at 2,745,028 to 2,745,753 _2283 Shewana3_2284: Shewana3_2284 - inositol monophosphatase (RefSeq), at 2,745,908 to 2,746,711 _2284 Position (kb) 2745 2746Strain fitness (log2 ratio) -1 0 1at 2744.991 kb on - strandat 2745.667 kb on - strand, within Shewana3_2283at 2746.002 kb on + strand, within Shewana3_2284at 2746.566 kb on + strand, within Shewana3_2284

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,744,991 - -1.3
2,745,667 - Shewana3_2283 0.88 +0.9
2,746,002 + Shewana3_2284 0.12 +1.2
2,746,566 + Shewana3_2284 0.82 +0.3

Or see this region's nucleotide sequence