Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2238 and Shewana3_2239 are separated by 126 nucleotides Shewana3_2239 and Shewana3_2240 are separated by 75 nucleotides
Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966
_2238
Shewana3_2239: Shewana3_2239 - GCN5-related N-acetyltransferase (RefSeq), at 2,693,093 to 2,693,545
_2239
Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487
_2240
Position (kb)
2693
2694 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2692.104 kb on + strand at 2692.239 kb on + strand at 2692.589 kb on + strand at 2692.849 kb on + strand, within Shewana3_2238 at 2692.873 kb on - strand, within Shewana3_2238 at 2692.915 kb on + strand, within Shewana3_2238 at 2692.937 kb on + strand at 2693.018 kb on + strand at 2693.072 kb on + strand at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.284 kb on + strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.292 kb on - strand, within Shewana3_2239 at 2693.448 kb on - strand, within Shewana3_2239 at 2693.508 kb on + strand at 2693.552 kb on + strand at 2693.812 kb on + strand, within Shewana3_2240 at 2693.995 kb on + strand, within Shewana3_2240 at 2694.096 kb on - strand, within Shewana3_2240 at 2694.179 kb on + strand, within Shewana3_2240 at 2694.188 kb on + strand, within Shewana3_2240 at 2694.456 kb on - strand at 2694.539 kb on + strand at 2694.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,692,104 + +4.0 2,692,239 + +1.0 2,692,589 + +0.4 2,692,849 + Shewana3_2238 0.68 +0.6 2,692,873 - Shewana3_2238 0.75 +1.2 2,692,915 + Shewana3_2238 0.86 -0.6 2,692,937 + -0.4 2,693,018 + +0.7 2,693,072 + +0.4 2,693,284 + Shewana3_2239 0.42 -0.8 2,693,284 + Shewana3_2239 0.42 -0.5 2,693,284 + Shewana3_2239 0.42 +0.2 2,693,284 + Shewana3_2239 0.42 -0.3 2,693,292 - Shewana3_2239 0.44 +2.4 2,693,292 - Shewana3_2239 0.44 -1.6 2,693,448 - Shewana3_2239 0.78 +4.0 2,693,508 + +1.4 2,693,552 + +1.0 2,693,812 + Shewana3_2240 0.22 +2.4 2,693,995 + Shewana3_2240 0.43 +1.4 2,694,096 - Shewana3_2240 0.55 +3.0 2,694,179 + Shewana3_2240 0.64 +0.1 2,694,188 + Shewana3_2240 0.65 +0.5 2,694,456 - +0.4 2,694,539 + +0.3 2,694,539 + +1.4
Or see this region's nucleotide sequence