Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2239

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2238 and Shewana3_2239 are separated by 126 nucleotidesShewana3_2239 and Shewana3_2240 are separated by 75 nucleotides Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966 _2238 Shewana3_2239: Shewana3_2239 - GCN5-related N-acetyltransferase (RefSeq), at 2,693,093 to 2,693,545 _2239 Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487 _2240 Position (kb) 2693 2694Strain fitness (log2 ratio) -1 0 1 2 3 4at 2692.104 kb on + strandat 2692.239 kb on + strandat 2692.589 kb on + strandat 2692.849 kb on + strand, within Shewana3_2238at 2692.873 kb on - strand, within Shewana3_2238at 2692.915 kb on + strand, within Shewana3_2238at 2692.937 kb on + strandat 2693.018 kb on + strandat 2693.072 kb on + strandat 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.284 kb on + strand, within Shewana3_2239at 2693.292 kb on - strand, within Shewana3_2239at 2693.292 kb on - strand, within Shewana3_2239at 2693.448 kb on - strand, within Shewana3_2239at 2693.508 kb on + strandat 2693.552 kb on + strandat 2693.812 kb on + strand, within Shewana3_2240at 2693.995 kb on + strand, within Shewana3_2240at 2694.096 kb on - strand, within Shewana3_2240at 2694.179 kb on + strand, within Shewana3_2240at 2694.188 kb on + strand, within Shewana3_2240at 2694.456 kb on - strandat 2694.539 kb on + strandat 2694.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,692,104 + +4.0
2,692,239 + +1.0
2,692,589 + +0.4
2,692,849 + Shewana3_2238 0.68 +0.6
2,692,873 - Shewana3_2238 0.75 +1.2
2,692,915 + Shewana3_2238 0.86 -0.6
2,692,937 + -0.4
2,693,018 + +0.7
2,693,072 + +0.4
2,693,284 + Shewana3_2239 0.42 -0.8
2,693,284 + Shewana3_2239 0.42 -0.5
2,693,284 + Shewana3_2239 0.42 +0.2
2,693,284 + Shewana3_2239 0.42 -0.3
2,693,292 - Shewana3_2239 0.44 +2.4
2,693,292 - Shewana3_2239 0.44 -1.6
2,693,448 - Shewana3_2239 0.78 +4.0
2,693,508 + +1.4
2,693,552 + +1.0
2,693,812 + Shewana3_2240 0.22 +2.4
2,693,995 + Shewana3_2240 0.43 +1.4
2,694,096 - Shewana3_2240 0.55 +3.0
2,694,179 + Shewana3_2240 0.64 +0.1
2,694,188 + Shewana3_2240 0.65 +0.5
2,694,456 - +0.4
2,694,539 + +0.3
2,694,539 + +1.4

Or see this region's nucleotide sequence