Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2237

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2236 and Shewana3_2237 are separated by 214 nucleotidesShewana3_2237 and Shewana3_2238 are separated by 820 nucleotides Shewana3_2236: Shewana3_2236 - lytic transglycosylase, catalytic (RefSeq), at 2,688,936 to 2,690,861 _2236 Shewana3_2237: Shewana3_2237 - diguanylate phosphodiesterase (RefSeq), at 2,691,076 to 2,691,777 _2237 Shewana3_2238: Shewana3_2238 - hypothetical protein (RefSeq), at 2,692,598 to 2,692,966 _2238 Position (kb) 2691 2692Strain fitness (log2 ratio) -1 0 1 2 3 4at 2690.541 kb on + strand, within Shewana3_2236at 2690.567 kb on - strand, within Shewana3_2236at 2690.567 kb on - strand, within Shewana3_2236at 2690.572 kb on - strand, within Shewana3_2236at 2690.657 kb on + strand, within Shewana3_2236at 2691.186 kb on + strand, within Shewana3_2237at 2691.187 kb on + strand, within Shewana3_2237at 2691.593 kb on + strand, within Shewana3_2237at 2691.766 kb on - strandat 2691.836 kb on + strandat 2692.104 kb on + strandat 2692.239 kb on + strandat 2692.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,690,541 + Shewana3_2236 0.83 -0.9
2,690,567 - Shewana3_2236 0.85 +0.4
2,690,567 - Shewana3_2236 0.85 -0.3
2,690,572 - Shewana3_2236 0.85 +2.6
2,690,657 + Shewana3_2236 0.89 -1.4
2,691,186 + Shewana3_2237 0.16 -1.6
2,691,187 + Shewana3_2237 0.16 -0.4
2,691,593 + Shewana3_2237 0.74 +1.4
2,691,766 - +2.4
2,691,836 + +3.0
2,692,104 + +4.0
2,692,239 + +1.0
2,692,589 + +0.4

Or see this region's nucleotide sequence