Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2230

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2229 and Shewana3_2230 are separated by 247 nucleotidesShewana3_2230 and Shewana3_2231 overlap by 1 nucleotides Shewana3_2229: Shewana3_2229 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,679,951 to 2,682,044 _2229 Shewana3_2230: Shewana3_2230 - MarR family transcriptional regulator (RefSeq), at 2,682,292 to 2,682,753 _2230 Shewana3_2231: Shewana3_2231 - cation diffusion facilitator family transporter (RefSeq), at 2,682,753 to 2,684,003 _2231 Position (kb) 2682 2683Strain fitness (log2 ratio) -1 0 1 2 3at 2681.605 kb on - strand, within Shewana3_2229at 2682.079 kb on - strandat 2682.342 kb on + strand, within Shewana3_2230at 2682.350 kb on - strand, within Shewana3_2230at 2682.374 kb on - strand, within Shewana3_2230at 2682.480 kb on - strand, within Shewana3_2230at 2682.589 kb on - strand, within Shewana3_2230at 2682.596 kb on - strand, within Shewana3_2230at 2682.685 kb on + strand, within Shewana3_2230at 2683.039 kb on + strand, within Shewana3_2231at 2683.150 kb on - strand, within Shewana3_2231at 2683.249 kb on - strand, within Shewana3_2231at 2683.416 kb on - strand, within Shewana3_2231at 2683.537 kb on - strand, within Shewana3_2231at 2683.605 kb on - strand, within Shewana3_2231at 2683.655 kb on - strand, within Shewana3_2231at 2683.673 kb on - strand, within Shewana3_2231at 2683.686 kb on + strand, within Shewana3_2231at 2683.694 kb on - strand, within Shewana3_2231

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,681,605 - Shewana3_2229 0.79 +0.8
2,682,079 - +0.6
2,682,342 + Shewana3_2230 0.11 +3.0
2,682,350 - Shewana3_2230 0.13 -1.2
2,682,374 - Shewana3_2230 0.18 -0.3
2,682,480 - Shewana3_2230 0.41 -1.4
2,682,589 - Shewana3_2230 0.64 -0.0
2,682,596 - Shewana3_2230 0.66 -1.3
2,682,685 + Shewana3_2230 0.85 -0.0
2,683,039 + Shewana3_2231 0.23 -0.2
2,683,150 - Shewana3_2231 0.32 +0.5
2,683,249 - Shewana3_2231 0.40 +0.5
2,683,416 - Shewana3_2231 0.53 +2.4
2,683,537 - Shewana3_2231 0.63 +0.7
2,683,605 - Shewana3_2231 0.68 -1.0
2,683,655 - Shewana3_2231 0.72 +0.3
2,683,673 - Shewana3_2231 0.74 +0.3
2,683,686 + Shewana3_2231 0.75 +2.0
2,683,694 - Shewana3_2231 0.75 +0.1

Or see this region's nucleotide sequence