Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2229 and Shewana3_2230 are separated by 247 nucleotides Shewana3_2230 and Shewana3_2231 overlap by 1 nucleotides
Shewana3_2229: Shewana3_2229 - peptidase S9 prolyl oligopeptidase (RefSeq), at 2,679,951 to 2,682,044
_2229
Shewana3_2230: Shewana3_2230 - MarR family transcriptional regulator (RefSeq), at 2,682,292 to 2,682,753
_2230
Shewana3_2231: Shewana3_2231 - cation diffusion facilitator family transporter (RefSeq), at 2,682,753 to 2,684,003
_2231
Position (kb)
2682
2683 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2681.605 kb on - strand, within Shewana3_2229 at 2682.079 kb on - strand at 2682.342 kb on + strand, within Shewana3_2230 at 2682.350 kb on - strand, within Shewana3_2230 at 2682.374 kb on - strand, within Shewana3_2230 at 2682.480 kb on - strand, within Shewana3_2230 at 2682.589 kb on - strand, within Shewana3_2230 at 2682.596 kb on - strand, within Shewana3_2230 at 2682.685 kb on + strand, within Shewana3_2230 at 2683.039 kb on + strand, within Shewana3_2231 at 2683.150 kb on - strand, within Shewana3_2231 at 2683.249 kb on - strand, within Shewana3_2231 at 2683.416 kb on - strand, within Shewana3_2231 at 2683.537 kb on - strand, within Shewana3_2231 at 2683.605 kb on - strand, within Shewana3_2231 at 2683.655 kb on - strand, within Shewana3_2231 at 2683.673 kb on - strand, within Shewana3_2231 at 2683.686 kb on + strand, within Shewana3_2231 at 2683.694 kb on - strand, within Shewana3_2231
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,681,605 - Shewana3_2229 0.79 +0.8 2,682,079 - +0.6 2,682,342 + Shewana3_2230 0.11 +3.0 2,682,350 - Shewana3_2230 0.13 -1.2 2,682,374 - Shewana3_2230 0.18 -0.3 2,682,480 - Shewana3_2230 0.41 -1.4 2,682,589 - Shewana3_2230 0.64 -0.0 2,682,596 - Shewana3_2230 0.66 -1.3 2,682,685 + Shewana3_2230 0.85 -0.0 2,683,039 + Shewana3_2231 0.23 -0.2 2,683,150 - Shewana3_2231 0.32 +0.5 2,683,249 - Shewana3_2231 0.40 +0.5 2,683,416 - Shewana3_2231 0.53 +2.4 2,683,537 - Shewana3_2231 0.63 +0.7 2,683,605 - Shewana3_2231 0.68 -1.0 2,683,655 - Shewana3_2231 0.72 +0.3 2,683,673 - Shewana3_2231 0.74 +0.3 2,683,686 + Shewana3_2231 0.75 +2.0 2,683,694 - Shewana3_2231 0.75 +0.1
Or see this region's nucleotide sequence