Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2210

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2209 and Shewana3_2210 are separated by 157 nucleotidesShewana3_2210 and Shewana3_2211 are separated by 98 nucleotides Shewana3_2209: Shewana3_2209 - ABC transporter related (RefSeq), at 2,654,270 to 2,655,862 _2209 Shewana3_2210: Shewana3_2210 - activator of Hsp90 ATPase family protein (RefSeq), at 2,656,020 to 2,656,469 _2210 Shewana3_2211: Shewana3_2211 - NERD domain-containing protein (RefSeq), at 2,656,568 to 2,657,629 _2211 Position (kb) 2656 2657Strain fitness (log2 ratio) -1 0 1 2 3 4at 2655.043 kb on - strand, within Shewana3_2209at 2655.429 kb on + strand, within Shewana3_2209at 2656.238 kb on - strand, within Shewana3_2210at 2656.246 kb on + strand, within Shewana3_2210at 2656.254 kb on - strand, within Shewana3_2210at 2656.256 kb on + strand, within Shewana3_2210at 2656.256 kb on + strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.297 kb on - strand, within Shewana3_2210at 2656.303 kb on - strand, within Shewana3_2210at 2656.399 kb on + strand, within Shewana3_2210at 2656.479 kb on - strandat 2656.842 kb on - strand, within Shewana3_2211at 2657.155 kb on - strand, within Shewana3_2211at 2657.294 kb on - strand, within Shewana3_2211at 2657.421 kb on + strand, within Shewana3_2211

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,655,043 - Shewana3_2209 0.49 +2.0
2,655,429 + Shewana3_2209 0.73 -1.0
2,656,238 - Shewana3_2210 0.48 -0.4
2,656,246 + Shewana3_2210 0.50 +2.4
2,656,254 - Shewana3_2210 0.52 -1.5
2,656,256 + Shewana3_2210 0.52 +4.0
2,656,256 + Shewana3_2210 0.52 +3.0
2,656,264 - Shewana3_2210 0.54 -1.7
2,656,264 - Shewana3_2210 0.54 +0.8
2,656,264 - Shewana3_2210 0.54 -1.6
2,656,264 - Shewana3_2210 0.54 -0.4
2,656,297 - Shewana3_2210 0.62 -0.5
2,656,303 - Shewana3_2210 0.63 -0.7
2,656,399 + Shewana3_2210 0.84 +3.0
2,656,479 - -0.4
2,656,842 - Shewana3_2211 0.26 +1.4
2,657,155 - Shewana3_2211 0.55 +3.0
2,657,294 - Shewana3_2211 0.68 +4.0
2,657,421 + Shewana3_2211 0.80 +1.1

Or see this region's nucleotide sequence