Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2200 and Shewana3_2201 are separated by 287 nucleotides Shewana3_2201 and Shewana3_2202 overlap by 4 nucleotides Shewana3_2202 and Shewana3_2203 are separated by 49 nucleotides
Shewana3_2200: Shewana3_2200 - response regulator receiver protein (RefSeq), at 2,640,081 to 2,642,006
_2200
Shewana3_2201: Shewana3_2201 - response regulator receiver modulated diguanylate phosphodiesterase (RefSeq), at 2,642,294 to 2,643,496
_2201
Shewana3_2202: Shewana3_2202 - XRE family transcriptional regulator (RefSeq), at 2,643,493 to 2,644,374
_2202
Shewana3_2203: Shewana3_2203 - hypothetical protein (RefSeq), at 2,644,424 to 2,644,717
_2203
Position (kb)
2642
2643
2644 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2641.389 kb on + strand, within Shewana3_2200 at 2641.645 kb on + strand, within Shewana3_2200 at 2641.655 kb on + strand, within Shewana3_2200 at 2641.688 kb on + strand, within Shewana3_2200 at 2641.929 kb on - strand at 2642.032 kb on - strand at 2642.067 kb on + strand at 2642.075 kb on - strand at 2642.181 kb on + strand at 2642.199 kb on - strand at 2642.215 kb on + strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.404 kb on - strand at 2642.664 kb on + strand, within Shewana3_2201 at 2642.694 kb on - strand, within Shewana3_2201 at 2642.830 kb on - strand, within Shewana3_2201 at 2642.919 kb on + strand, within Shewana3_2201 at 2642.970 kb on - strand, within Shewana3_2201 at 2643.030 kb on + strand, within Shewana3_2201 at 2643.049 kb on - strand, within Shewana3_2201 at 2643.073 kb on - strand, within Shewana3_2201 at 2643.295 kb on - strand, within Shewana3_2201 at 2643.349 kb on - strand, within Shewana3_2201 at 2643.352 kb on + strand, within Shewana3_2201 at 2643.365 kb on + strand, within Shewana3_2201 at 2643.378 kb on - strand at 2643.423 kb on + strand at 2643.423 kb on + strand at 2643.536 kb on + strand at 2643.536 kb on + strand at 2643.697 kb on + strand, within Shewana3_2202 at 2643.697 kb on - strand, within Shewana3_2202 at 2643.753 kb on - strand, within Shewana3_2202 at 2643.753 kb on - strand, within Shewana3_2202 at 2643.753 kb on - strand, within Shewana3_2202 at 2643.753 kb on - strand, within Shewana3_2202 at 2643.905 kb on + strand, within Shewana3_2202 at 2643.905 kb on + strand, within Shewana3_2202 at 2643.905 kb on + strand, within Shewana3_2202 at 2643.913 kb on - strand, within Shewana3_2202 at 2643.913 kb on - strand, within Shewana3_2202 at 2643.975 kb on + strand, within Shewana3_2202 at 2644.075 kb on - strand, within Shewana3_2202 at 2644.311 kb on + strand at 2644.354 kb on + strand at 2644.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,641,389 + Shewana3_2200 0.68 +1.4 2,641,645 + Shewana3_2200 0.81 +4.0 2,641,655 + Shewana3_2200 0.82 +0.6 2,641,688 + Shewana3_2200 0.83 +2.4 2,641,929 - +1.0 2,642,032 - +0.4 2,642,067 + -0.8 2,642,075 - +2.0 2,642,181 + -0.0 2,642,199 - +1.6 2,642,215 + +2.0 2,642,404 - -1.9 2,642,404 - +1.4 2,642,404 - -0.5 2,642,404 - +1.8 2,642,664 + Shewana3_2201 0.31 +3.0 2,642,694 - Shewana3_2201 0.33 -0.1 2,642,830 - Shewana3_2201 0.45 +0.7 2,642,919 + Shewana3_2201 0.52 +0.6 2,642,970 - Shewana3_2201 0.56 +1.6 2,643,030 + Shewana3_2201 0.61 +2.0 2,643,049 - Shewana3_2201 0.63 +1.6 2,643,073 - Shewana3_2201 0.65 +4.0 2,643,295 - Shewana3_2201 0.83 -2.0 2,643,349 - Shewana3_2201 0.88 +0.8 2,643,352 + Shewana3_2201 0.88 +2.4 2,643,365 + Shewana3_2201 0.89 +2.0 2,643,378 - +2.0 2,643,423 + +0.2 2,643,423 + +1.6 2,643,536 + -1.0 2,643,536 + +0.6 2,643,697 + Shewana3_2202 0.23 +0.7 2,643,697 - Shewana3_2202 0.23 +4.0 2,643,753 - Shewana3_2202 0.29 +4.0 2,643,753 - Shewana3_2202 0.29 +2.4 2,643,753 - Shewana3_2202 0.29 +3.0 2,643,753 - Shewana3_2202 0.29 +1.6 2,643,905 + Shewana3_2202 0.47 +2.4 2,643,905 + Shewana3_2202 0.47 +4.0 2,643,905 + Shewana3_2202 0.47 +1.6 2,643,913 - Shewana3_2202 0.48 +2.0 2,643,913 - Shewana3_2202 0.48 +0.8 2,643,975 + Shewana3_2202 0.55 +3.0 2,644,075 - Shewana3_2202 0.66 +0.7 2,644,311 + +4.0 2,644,354 + +0.8 2,644,426 + +3.0
Or see this region's nucleotide sequence