Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2178

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2177 and Shewana3_2178 are separated by 9 nucleotidesShewana3_2178 and Shewana3_2179 are separated by 229 nucleotides Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809 _2177 Shewana3_2178: Shewana3_2178 - hypothetical protein (RefSeq), at 2,612,819 to 2,613,241 _2178 Shewana3_2179: Shewana3_2179 - hypothetical protein (RefSeq), at 2,613,471 to 2,614,376 _2179 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2612.266 kb on + strand, within Shewana3_2177at 2612.406 kb on + strand, within Shewana3_2177at 2612.539 kb on - strand, within Shewana3_2177at 2612.760 kb on + strandat 2612.783 kb on + strandat 2612.804 kb on + strandat 2612.902 kb on - strand, within Shewana3_2178at 2612.957 kb on + strand, within Shewana3_2178at 2612.957 kb on + strand, within Shewana3_2178at 2613.005 kb on + strand, within Shewana3_2178at 2613.084 kb on + strand, within Shewana3_2178at 2613.106 kb on + strand, within Shewana3_2178at 2613.106 kb on + strand, within Shewana3_2178at 2613.106 kb on + strand, within Shewana3_2178at 2613.106 kb on + strand, within Shewana3_2178at 2613.114 kb on - strand, within Shewana3_2178at 2613.221 kb on + strandat 2613.226 kb on + strandat 2613.385 kb on + strandat 2613.385 kb on + strandat 2613.385 kb on + strandat 2613.385 kb on + strandat 2613.385 kb on + strandat 2613.419 kb on - strandat 2613.438 kb on + strandat 2613.462 kb on - strandat 2613.462 kb on - strandat 2613.462 kb on - strandat 2613.464 kb on - strandat 2613.574 kb on - strand, within Shewana3_2179at 2613.795 kb on - strand, within Shewana3_2179at 2613.800 kb on - strand, within Shewana3_2179at 2613.843 kb on - strand, within Shewana3_2179at 2613.850 kb on - strand, within Shewana3_2179at 2613.982 kb on + strand, within Shewana3_2179at 2613.982 kb on + strand, within Shewana3_2179at 2613.989 kb on - strand, within Shewana3_2179at 2613.990 kb on - strand, within Shewana3_2179at 2613.990 kb on - strandat 2614.042 kb on - strand, within Shewana3_2179at 2614.081 kb on - strand, within Shewana3_2179at 2614.101 kb on - strand, within Shewana3_2179at 2614.160 kb on - strand, within Shewana3_2179at 2614.194 kb on + strand, within Shewana3_2179at 2614.202 kb on - strand, within Shewana3_2179at 2614.202 kb on - strand, within Shewana3_2179at 2614.204 kb on + strand, within Shewana3_2179

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,612,266 + Shewana3_2177 0.75 +0.3
2,612,406 + Shewana3_2177 0.82 +2.4
2,612,539 - Shewana3_2177 0.88 +4.0
2,612,760 + +4.0
2,612,783 + +4.0
2,612,804 + +1.2
2,612,902 - Shewana3_2178 0.20 +4.0
2,612,957 + Shewana3_2178 0.33 +3.0
2,612,957 + Shewana3_2178 0.33 +2.0
2,613,005 + Shewana3_2178 0.44 +4.0
2,613,084 + Shewana3_2178 0.63 +2.4
2,613,106 + Shewana3_2178 0.68 +1.4
2,613,106 + Shewana3_2178 0.68 +2.4
2,613,106 + Shewana3_2178 0.68 +1.6
2,613,106 + Shewana3_2178 0.68 +2.4
2,613,114 - Shewana3_2178 0.70 +1.2
2,613,221 + +2.4
2,613,226 + +3.0
2,613,385 + +0.1
2,613,385 + +1.2
2,613,385 + -0.1
2,613,385 + -0.5
2,613,385 + +0.5
2,613,419 - +2.0
2,613,438 + +3.0
2,613,462 - +4.0
2,613,462 - +2.4
2,613,462 - +3.0
2,613,464 - +1.6
2,613,574 - Shewana3_2179 0.11 +3.0
2,613,795 - Shewana3_2179 0.36 +3.0
2,613,800 - Shewana3_2179 0.36 -1.9
2,613,843 - Shewana3_2179 0.41 -0.4
2,613,850 - Shewana3_2179 0.42 +2.0
2,613,982 + Shewana3_2179 0.56 +3.0
2,613,982 + Shewana3_2179 0.56 +3.0
2,613,989 - Shewana3_2179 0.57 +4.0
2,613,990 - Shewana3_2179 0.57 +3.0
2,613,990 - +4.0
2,614,042 - Shewana3_2179 0.63 +1.6
2,614,081 - Shewana3_2179 0.67 +3.0
2,614,101 - Shewana3_2179 0.70 +0.3
2,614,160 - Shewana3_2179 0.76 +3.0
2,614,194 + Shewana3_2179 0.80 +4.0
2,614,202 - Shewana3_2179 0.81 -0.4
2,614,202 - Shewana3_2179 0.81 -0.0
2,614,204 + Shewana3_2179 0.81 +1.4

Or see this region's nucleotide sequence