Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2171

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2170 and Shewana3_2171 are separated by 80 nucleotidesShewana3_2171 and Shewana3_2172 are separated by 65 nucleotidesShewana3_2172 and Shewana3_2173 overlap by 8 nucleotides Shewana3_2170: Shewana3_2170 - electron transport complex protein RnfC (RefSeq), at 2,601,834 to 2,604,200 _2170 Shewana3_2171: Shewana3_2171 - electron transport complex, RnfABCDGE type, D subunit (RefSeq), at 2,604,281 to 2,605,330 _2171 Shewana3_2172: Shewana3_2172 - electron transport complex protein RnfG (RefSeq), at 2,605,396 to 2,606,022 _2172 Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713 _2173 Position (kb) 2604 2605 2606Strain fitness (log2 ratio) -1 0 1 2at 2603.384 kb on + strand, within Shewana3_2170at 2603.796 kb on + strand, within Shewana3_2170at 2603.849 kb on + strand, within Shewana3_2170at 2603.931 kb on + strand, within Shewana3_2170at 2603.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,603,384 + Shewana3_2170 0.65 +2.3
2,603,796 + Shewana3_2170 0.83 -0.9
2,603,849 + Shewana3_2170 0.85 -1.0
2,603,931 + Shewana3_2170 0.89 -0.7
2,603,997 + -0.5

Or see this region's nucleotide sequence