Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2161

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2160 and Shewana3_2161 are separated by 188 nucleotidesShewana3_2161 and Shewana3_2162 are separated by 249 nucleotidesShewana3_2162 and Shewana3_R0092 are separated by 125 nucleotidesShewana3_R0092 and Shewana3_R0093 are separated by 39 nucleotides Shewana3_2160: Shewana3_2160 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 2,587,987 to 2,590,170 _2160 Shewana3_2161: Shewana3_2161 - hypothetical protein (RefSeq), at 2,590,359 to 2,590,646 _2161 Shewana3_2162: Shewana3_2162 - hypothetical protein (RefSeq), at 2,590,896 to 2,591,384 _2162 Shewana3_R0092: Shewana3_R0092 - tRNA-Tyr (RefSeq), at 2,591,510 to 2,591,594 _R0092 Shewana3_R0093: Shewana3_R0093 - tRNA-Tyr (RefSeq), at 2,591,634 to 2,591,718 _R0093 Position (kb) 2590 2591Strain fitness (log2 ratio) -1 0 1 2 3 4at 2589.374 kb on - strand, within Shewana3_2160at 2589.419 kb on + strand, within Shewana3_2160at 2589.612 kb on - strand, within Shewana3_2160at 2589.841 kb on - strandat 2589.868 kb on - strand, within Shewana3_2160at 2589.946 kb on - strand, within Shewana3_2160at 2590.174 kb on + strandat 2590.350 kb on + strandat 2590.358 kb on - strandat 2590.515 kb on - strand, within Shewana3_2161at 2590.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,589,374 - Shewana3_2160 0.64 +1.6
2,589,419 + Shewana3_2160 0.66 +3.9
2,589,612 - Shewana3_2160 0.74 -0.6
2,589,841 - +3.9
2,589,868 - Shewana3_2160 0.86 +3.9
2,589,946 - Shewana3_2160 0.90 +2.3
2,590,174 + +2.9
2,590,350 + -0.5
2,590,358 - -0.4
2,590,515 - Shewana3_2161 0.54 -0.8
2,590,675 - +2.9

Or see this region's nucleotide sequence