Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2138

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2136 and Shewana3_2137 are separated by 101 nucleotidesShewana3_2137 and Shewana3_2138 are separated by 11 nucleotidesShewana3_2138 and Shewana3_2139 are separated by 55 nucleotidesShewana3_2139 and Shewana3_2140 are separated by 28 nucleotides Shewana3_2136: Shewana3_2136 - alpha/beta hydrolase fold (RefSeq), at 2,562,280 to 2,563,080 _2136 Shewana3_2137: Shewana3_2137 - hypothetical protein (RefSeq), at 2,563,182 to 2,563,403 _2137 Shewana3_2138: Shewana3_2138 - LexA regulated protein (RefSeq), at 2,563,415 to 2,563,687 _2138 Shewana3_2139: Shewana3_2139 - flavodoxin FldA (RefSeq), at 2,563,743 to 2,564,270 _2139 Shewana3_2140: Shewana3_2140 - hypothetical protein (RefSeq), at 2,564,299 to 2,565,531 _2140 Position (kb) 2563 2564Strain fitness (log2 ratio) -2 -1 0 1 2at 2562.812 kb on + strand, within Shewana3_2136at 2562.943 kb on - strand, within Shewana3_2136at 2563.153 kb on - strandat 2563.371 kb on - strand, within Shewana3_2137at 2563.537 kb on + strand, within Shewana3_2138at 2563.638 kb on + strand, within Shewana3_2138at 2563.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,562,812 + Shewana3_2136 0.66 +0.6
2,562,943 - Shewana3_2136 0.83 +0.4
2,563,153 - -2.2
2,563,371 - Shewana3_2137 0.85 +1.9
2,563,537 + Shewana3_2138 0.45 -2.4
2,563,638 + Shewana3_2138 0.82 +1.1
2,563,710 + +0.7

Or see this region's nucleotide sequence