Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2129 and Shewana3_2130 are separated by 9 nucleotides Shewana3_2130 and Shewana3_2131 are separated by 3 nucleotides
Shewana3_2129: Shewana3_2129 - dihydrolipoamide acetyltransferase (RefSeq), at 2,553,896 to 2,555,491
_2129
Shewana3_2130: Shewana3_2130 - transketolase, central region (RefSeq), at 2,555,501 to 2,556,478
_2130
Shewana3_2131: Shewana3_2131 - dehydrogenase, E1 component (RefSeq), at 2,556,482 to 2,557,660
_2131
Position (kb)
2555
2556
2557 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2554.593 kb on + strand, within Shewana3_2129 at 2554.611 kb on - strand, within Shewana3_2129 at 2554.688 kb on + strand, within Shewana3_2129 at 2554.701 kb on - strand, within Shewana3_2129 at 2554.811 kb on + strand, within Shewana3_2129 at 2554.813 kb on - strand, within Shewana3_2129 at 2554.819 kb on - strand, within Shewana3_2129 at 2555.268 kb on + strand, within Shewana3_2129 at 2555.897 kb on - strand, within Shewana3_2130 at 2556.017 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.027 kb on - strand, within Shewana3_2130 at 2556.133 kb on + strand, within Shewana3_2130 at 2556.156 kb on - strand, within Shewana3_2130 at 2556.410 kb on + strand at 2556.918 kb on - strand, within Shewana3_2131 at 2557.072 kb on - strand, within Shewana3_2131 at 2557.134 kb on - strand, within Shewana3_2131 at 2557.157 kb on + strand, within Shewana3_2131 at 2557.317 kb on + strand, within Shewana3_2131 at 2557.325 kb on - strand, within Shewana3_2131
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,554,593 + Shewana3_2129 0.44 +3.9 2,554,611 - Shewana3_2129 0.45 -0.8 2,554,688 + Shewana3_2129 0.50 -0.6 2,554,701 - Shewana3_2129 0.50 +1.3 2,554,811 + Shewana3_2129 0.57 +2.3 2,554,813 - Shewana3_2129 0.57 +0.4 2,554,819 - Shewana3_2129 0.58 +0.3 2,555,268 + Shewana3_2129 0.86 +1.1 2,555,897 - Shewana3_2130 0.40 -0.3 2,556,017 - Shewana3_2130 0.53 +0.4 2,556,027 - Shewana3_2130 0.54 +1.9 2,556,027 - Shewana3_2130 0.54 +1.6 2,556,027 - Shewana3_2130 0.54 -1.1 2,556,133 + Shewana3_2130 0.65 -0.1 2,556,156 - Shewana3_2130 0.67 +2.9 2,556,410 + +2.3 2,556,918 - Shewana3_2131 0.37 -0.4 2,557,072 - Shewana3_2131 0.50 +1.3 2,557,134 - Shewana3_2131 0.55 +1.3 2,557,157 + Shewana3_2131 0.57 +2.9 2,557,317 + Shewana3_2131 0.71 +3.9 2,557,325 - Shewana3_2131 0.72 +0.9
Or see this region's nucleotide sequence