Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2130
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,554,593 | + | Shewana3_2129 | 0.44 | +3.9 | |
2,554,611 | - | Shewana3_2129 | 0.45 | -0.8 | |
2,554,688 | + | Shewana3_2129 | 0.50 | -0.6 | |
2,554,701 | - | Shewana3_2129 | 0.50 | +1.3 | |
2,554,811 | + | Shewana3_2129 | 0.57 | +2.3 | |
2,554,813 | - | Shewana3_2129 | 0.57 | +0.4 | |
2,554,819 | - | Shewana3_2129 | 0.58 | +0.3 | |
2,555,268 | + | Shewana3_2129 | 0.86 | +1.1 | |
2,555,897 | - | Shewana3_2130 | 0.40 | -0.3 | |
2,556,017 | - | Shewana3_2130 | 0.53 | +0.4 | |
2,556,027 | - | Shewana3_2130 | 0.54 | +1.9 | |
2,556,027 | - | Shewana3_2130 | 0.54 | +1.6 | |
2,556,027 | - | Shewana3_2130 | 0.54 | -1.1 | |
2,556,133 | + | Shewana3_2130 | 0.65 | -0.1 | |
2,556,156 | - | Shewana3_2130 | 0.67 | +2.9 | |
2,556,410 | + | +2.3 | |||
2,556,918 | - | Shewana3_2131 | 0.37 | -0.4 | |
2,557,072 | - | Shewana3_2131 | 0.50 | +1.3 | |
2,557,134 | - | Shewana3_2131 | 0.55 | +1.3 | |
2,557,157 | + | Shewana3_2131 | 0.57 | +2.9 | |
2,557,317 | + | Shewana3_2131 | 0.71 | +3.9 | |
2,557,325 | - | Shewana3_2131 | 0.72 | +0.9 |
Or see this region's nucleotide sequence