Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2105 and Shewana3_2106 are separated by 108 nucleotides Shewana3_2106 and Shewana3_2107 are separated by 223 nucleotides Shewana3_2107 and Shewana3_2108 are separated by 12 nucleotides Shewana3_2108 and Shewana3_2109 are separated by 11 nucleotides Shewana3_2109 and Shewana3_2110 overlap by 1 nucleotides
Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764
_2105
Shewana3_2106: Shewana3_2106 - hypothetical protein (RefSeq), at 2,530,873 to 2,531,358
_2106
Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018
_2107
Shewana3_2108: Shewana3_2108 - cytochrome c oxidase, cbb3-type, subunit II (RefSeq), at 2,533,031 to 2,533,657
_2108
Shewana3_2109: Shewana3_2109 - Cbb3-type cytochrome oxidase component (RefSeq), at 2,533,669 to 2,533,845
_2109
Shewana3_2110: Shewana3_2110 - cytochrome c oxidase, cbb3-type, subunit III (RefSeq), at 2,533,845 to 2,534,813
_2110
Position (kb)
2531
2532
2533
2534 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2531.099 kb on - strand, within Shewana3_2106 at 2531.522 kb on + strand at 2531.522 kb on + strand at 2531.612 kb on + strand at 2531.717 kb on + strand at 2531.717 kb on + strand at 2531.725 kb on - strand at 2532.124 kb on + strand, within Shewana3_2107 at 2532.124 kb on + strand, within Shewana3_2107 at 2532.215 kb on + strand, within Shewana3_2107 at 2532.266 kb on + strand, within Shewana3_2107 at 2532.364 kb on - strand, within Shewana3_2107 at 2532.436 kb on + strand, within Shewana3_2107 at 2532.498 kb on - strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.710 kb on + strand, within Shewana3_2107 at 2532.798 kb on + strand, within Shewana3_2107 at 2532.884 kb on - strand at 2533.028 kb on - strand at 2533.174 kb on + strand, within Shewana3_2108 at 2533.450 kb on - strand, within Shewana3_2108 at 2533.853 kb on + strand at 2533.890 kb on - strand at 2533.924 kb on + strand at 2533.972 kb on + strand, within Shewana3_2110
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,531,099 - Shewana3_2106 0.47 -0.7 2,531,522 + -1.2 2,531,522 + +1.1 2,531,612 + +0.5 2,531,717 + +1.1 2,531,717 + +1.0 2,531,725 - +0.9 2,532,124 + Shewana3_2107 0.38 +1.1 2,532,124 + Shewana3_2107 0.38 +1.4 2,532,215 + Shewana3_2107 0.44 +1.5 2,532,266 + Shewana3_2107 0.48 +2.1 2,532,364 - Shewana3_2107 0.54 +1.6 2,532,436 + Shewana3_2107 0.59 +1.1 2,532,498 - Shewana3_2107 0.64 +1.9 2,532,710 + Shewana3_2107 0.78 +2.4 2,532,710 + Shewana3_2107 0.78 +3.6 2,532,798 + Shewana3_2107 0.85 +2.5 2,532,884 - +0.9 2,533,028 - +1.7 2,533,174 + Shewana3_2108 0.23 -0.5 2,533,450 - Shewana3_2108 0.67 +0.0 2,533,853 + +0.7 2,533,890 - -1.0 2,533,924 + +1.4 2,533,972 + Shewana3_2110 0.13 +0.3
Or see this region's nucleotide sequence