Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2093

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2093 and Shewana3_2094 are separated by 104 nucleotides Shewana3_2093: Shewana3_2093 - transposase (RefSeq), at 2,513,627 to 2,513,866 _2093 Shewana3_2094: Shewana3_2094 - hypothetical protein (RefSeq), at 2,513,971 to 2,514,882 _2094 Position (kb) 2513 2514Strain fitness (log2 ratio) -1 0 1 2 3 4at 2512.758 kb on + strandat 2512.779 kb on - strandat 2512.930 kb on + strandat 2513.140 kb on + strandat 2513.143 kb on - strandat 2513.143 kb on - strandat 2513.143 kb on - strandat 2513.243 kb on - strandat 2513.302 kb on - strandat 2513.302 kb on - strandat 2513.451 kb on + strandat 2513.554 kb on - strandat 2513.554 kb on - strandat 2513.561 kb on + strandat 2513.647 kb on + strandat 2513.655 kb on - strand, within Shewana3_2093at 2513.691 kb on + strand, within Shewana3_2093at 2513.876 kb on - strandat 2513.953 kb on + strandat 2514.008 kb on + strandat 2514.016 kb on - strandat 2514.336 kb on + strand, within Shewana3_2094at 2514.336 kb on + strand, within Shewana3_2094at 2514.359 kb on - strand, within Shewana3_2094at 2514.486 kb on + strand, within Shewana3_2094at 2514.486 kb on + strand, within Shewana3_2094at 2514.608 kb on - strand, within Shewana3_2094at 2514.646 kb on - strand, within Shewana3_2094at 2514.652 kb on + strand, within Shewana3_2094at 2514.698 kb on - strand, within Shewana3_2094at 2514.765 kb on - strand, within Shewana3_2094

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,512,758 + +1.1
2,512,779 - +2.9
2,512,930 + +2.9
2,513,140 + +0.9
2,513,143 - +1.1
2,513,143 - +2.9
2,513,143 - +2.3
2,513,243 - -0.5
2,513,302 - +1.6
2,513,302 - +3.9
2,513,451 + +1.9
2,513,554 - +3.9
2,513,554 - +1.1
2,513,561 + +3.9
2,513,647 + -0.3
2,513,655 - Shewana3_2093 0.12 +1.3
2,513,691 + Shewana3_2093 0.27 +3.9
2,513,876 - +1.9
2,513,953 + +0.7
2,514,008 + +1.1
2,514,016 - +0.2
2,514,336 + Shewana3_2094 0.40 +0.7
2,514,336 + Shewana3_2094 0.40 +3.9
2,514,359 - Shewana3_2094 0.43 -0.8
2,514,486 + Shewana3_2094 0.56 +1.3
2,514,486 + Shewana3_2094 0.56 +1.9
2,514,608 - Shewana3_2094 0.70 -0.4
2,514,646 - Shewana3_2094 0.74 -0.1
2,514,652 + Shewana3_2094 0.75 +0.6
2,514,698 - Shewana3_2094 0.80 +1.6
2,514,765 - Shewana3_2094 0.87 +1.1

Or see this region's nucleotide sequence