Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2087

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2086 and Shewana3_2087 are separated by 99 nucleotidesShewana3_2087 and Shewana3_2088 are separated by 99 nucleotides Shewana3_2086: Shewana3_2086 - beta-xylosidase-like protein (RefSeq), at 2,500,940 to 2,504,305 _2086 Shewana3_2087: Shewana3_2087 - LysR family transcriptional regulator (RefSeq), at 2,504,405 to 2,505,256 _2087 Shewana3_2088: Shewana3_2088 - L-arabinolactonase (EC 3.1.1.15) (from data), at 2,505,356 to 2,506,258 _2088 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -1 0 1 2 3 4at 2503.420 kb on - strand, within Shewana3_2086at 2503.494 kb on - strand, within Shewana3_2086at 2503.622 kb on - strand, within Shewana3_2086at 2503.622 kb on - strand, within Shewana3_2086at 2503.754 kb on - strand, within Shewana3_2086at 2503.902 kb on + strand, within Shewana3_2086at 2503.902 kb on + strand, within Shewana3_2086at 2504.327 kb on + strandat 2504.356 kb on - strandat 2504.394 kb on - strandat 2504.514 kb on + strand, within Shewana3_2087at 2504.519 kb on + strand, within Shewana3_2087at 2504.522 kb on - strand, within Shewana3_2087at 2504.522 kb on - strand, within Shewana3_2087at 2504.522 kb on - strand, within Shewana3_2087at 2504.532 kb on - strand, within Shewana3_2087at 2504.623 kb on + strand, within Shewana3_2087at 2504.697 kb on - strand, within Shewana3_2087at 2504.699 kb on + strand, within Shewana3_2087at 2504.726 kb on - strand, within Shewana3_2087at 2504.726 kb on - strand, within Shewana3_2087at 2504.805 kb on + strand, within Shewana3_2087at 2504.825 kb on + strand, within Shewana3_2087at 2504.932 kb on + strand, within Shewana3_2087at 2505.041 kb on + strand, within Shewana3_2087at 2505.109 kb on + strand, within Shewana3_2087at 2505.117 kb on - strandat 2505.543 kb on + strand, within Shewana3_2088at 2505.720 kb on + strand, within Shewana3_2088at 2505.755 kb on + strand, within Shewana3_2088at 2505.826 kb on + strand, within Shewana3_2088at 2506.046 kb on + strand, within Shewana3_2088

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,503,420 - Shewana3_2086 0.74 +0.1
2,503,494 - Shewana3_2086 0.76 +0.1
2,503,622 - Shewana3_2086 0.80 +2.3
2,503,622 - Shewana3_2086 0.80 -0.6
2,503,754 - Shewana3_2086 0.84 +2.9
2,503,902 + Shewana3_2086 0.88 -0.1
2,503,902 + Shewana3_2086 0.88 -1.7
2,504,327 + -0.3
2,504,356 - +0.8
2,504,394 - -1.4
2,504,514 + Shewana3_2087 0.13 +1.6
2,504,519 + Shewana3_2087 0.13 -0.4
2,504,522 - Shewana3_2087 0.14 +3.9
2,504,522 - Shewana3_2087 0.14 +2.9
2,504,522 - Shewana3_2087 0.14 +1.3
2,504,532 - Shewana3_2087 0.15 +1.6
2,504,623 + Shewana3_2087 0.26 +1.1
2,504,697 - Shewana3_2087 0.34 +1.9
2,504,699 + Shewana3_2087 0.35 +3.9
2,504,726 - Shewana3_2087 0.38 +1.6
2,504,726 - Shewana3_2087 0.38 +1.6
2,504,805 + Shewana3_2087 0.47 +0.2
2,504,825 + Shewana3_2087 0.49 +1.1
2,504,932 + Shewana3_2087 0.62 -0.5
2,505,041 + Shewana3_2087 0.75 +1.6
2,505,109 + Shewana3_2087 0.83 +2.9
2,505,117 - +3.9
2,505,543 + Shewana3_2088 0.21 +0.4
2,505,720 + Shewana3_2088 0.40 +2.9
2,505,755 + Shewana3_2088 0.44 -0.1
2,505,826 + Shewana3_2088 0.52 +1.4
2,506,046 + Shewana3_2088 0.76 +1.9

Or see this region's nucleotide sequence