Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2083

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2082 and Shewana3_2083 overlap by 1 nucleotidesShewana3_2083 and Shewana3_2084 are separated by 179 nucleotides Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497 _2082 Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401 _2083 Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336 _2084 Position (kb) 2494 2495 2496 2497Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2493.767 kb on - strand, within Shewana3_2082at 2493.973 kb on + strand, within Shewana3_2082at 2493.974 kb on + strand, within Shewana3_2082at 2494.192 kb on + strand, within Shewana3_2082at 2494.265 kb on - strand, within Shewana3_2082at 2494.432 kb on - strandat 2494.436 kb on + strandat 2494.436 kb on + strandat 2494.436 kb on + strandat 2494.451 kb on + strandat 2494.577 kb on + strandat 2494.585 kb on - strandat 2494.585 kb on - strandat 2495.041 kb on - strand, within Shewana3_2083at 2495.099 kb on + strand, within Shewana3_2083at 2495.119 kb on + strand, within Shewana3_2083at 2495.126 kb on + strand, within Shewana3_2083at 2495.357 kb on - strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.651 kb on - strand, within Shewana3_2083at 2495.671 kb on - strand, within Shewana3_2083at 2495.782 kb on - strand, within Shewana3_2083at 2495.784 kb on + strand, within Shewana3_2083at 2495.786 kb on + strand, within Shewana3_2083at 2495.822 kb on + strand, within Shewana3_2083at 2495.980 kb on - strand, within Shewana3_2083at 2496.044 kb on + strand, within Shewana3_2083at 2496.113 kb on + strand, within Shewana3_2083at 2496.161 kb on + strand, within Shewana3_2083at 2496.413 kb on + strandat 2496.416 kb on - strandat 2496.513 kb on + strandat 2496.685 kb on + strand, within Shewana3_2084at 2496.704 kb on - strand, within Shewana3_2084at 2496.725 kb on + strand, within Shewana3_2084at 2496.766 kb on - strand, within Shewana3_2084at 2497.067 kb on - strand, within Shewana3_2084at 2497.141 kb on - strand, within Shewana3_2084at 2497.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,493,767 - Shewana3_2082 0.32 +1.9
2,493,973 + Shewana3_2082 0.51 -2.4
2,493,974 + Shewana3_2082 0.51 +0.6
2,494,192 + Shewana3_2082 0.71 +1.6
2,494,265 - Shewana3_2082 0.78 +1.9
2,494,432 - +3.9
2,494,436 + +1.9
2,494,436 + +2.3
2,494,436 + +0.9
2,494,451 + -1.2
2,494,577 + +0.6
2,494,585 - +3.9
2,494,585 - +1.9
2,495,041 - Shewana3_2083 0.29 -0.3
2,495,099 + Shewana3_2083 0.32 -0.3
2,495,119 + Shewana3_2083 0.33 -0.6
2,495,126 + Shewana3_2083 0.33 +1.1
2,495,357 - Shewana3_2083 0.45 +2.9
2,495,643 + Shewana3_2083 0.60 +0.4
2,495,643 + Shewana3_2083 0.60 -0.3
2,495,643 + Shewana3_2083 0.60 +0.9
2,495,643 + Shewana3_2083 0.60 +0.7
2,495,651 - Shewana3_2083 0.61 +1.6
2,495,671 - Shewana3_2083 0.62 +1.6
2,495,782 - Shewana3_2083 0.67 +3.9
2,495,784 + Shewana3_2083 0.68 +0.7
2,495,786 + Shewana3_2083 0.68 -0.4
2,495,822 + Shewana3_2083 0.70 -1.0
2,495,980 - Shewana3_2083 0.78 +1.6
2,496,044 + Shewana3_2083 0.81 -1.3
2,496,113 + Shewana3_2083 0.85 +1.1
2,496,161 + Shewana3_2083 0.87 -1.5
2,496,413 + -0.6
2,496,416 - +1.9
2,496,513 + +1.1
2,496,685 + Shewana3_2084 0.14 +1.1
2,496,704 - Shewana3_2084 0.16 -1.6
2,496,725 + Shewana3_2084 0.19 +3.9
2,496,766 - Shewana3_2084 0.24 -1.4
2,497,067 - Shewana3_2084 0.64 +0.4
2,497,141 - Shewana3_2084 0.74 +0.4
2,497,362 - +2.3

Or see this region's nucleotide sequence