Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2066

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2064 and araD are separated by 1 nucleotidesaraD and Shewana3_2066 are separated by 38 nucleotidesShewana3_2066 and Shewana3_2067 are separated by 76 nucleotidesShewana3_2067 and Shewana3_2068 are separated by 235 nucleotides Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371 _2064 Shewana3_2065: araD - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 2,472,373 to 2,473,068 araD Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,473,107 to 2,474,609 _2066 Shewana3_2067: Shewana3_2067 - HAD family hydrolase (RefSeq), at 2,474,686 to 2,475,294 _2067 Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246 _2068 Position (kb) 2473 2474 2475Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2472.263 kb on - strandat 2472.532 kb on + strand, within araDat 2472.540 kb on - strand, within araDat 2472.540 kb on - strand, within araDat 2472.653 kb on + strand, within araDat 2472.687 kb on - strand, within araDat 2472.716 kb on + strand, within araDat 2472.751 kb on - strand, within araDat 2472.875 kb on + strand, within araDat 2472.983 kb on + strand, within araDat 2473.163 kb on - strandat 2473.163 kb on - strandat 2473.359 kb on - strand, within Shewana3_2066at 2473.432 kb on - strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.748 kb on - strand, within Shewana3_2066at 2473.756 kb on - strand, within Shewana3_2066at 2473.926 kb on + strand, within Shewana3_2066at 2474.078 kb on - strand, within Shewana3_2066at 2474.078 kb on - strand, within Shewana3_2066at 2474.155 kb on + strand, within Shewana3_2066at 2474.392 kb on - strand, within Shewana3_2066at 2474.421 kb on + strand, within Shewana3_2066at 2474.517 kb on - strandat 2474.560 kb on - strandat 2474.620 kb on + strandat 2474.801 kb on + strand, within Shewana3_2067at 2475.153 kb on + strand, within Shewana3_2067at 2475.367 kb on - strandat 2475.513 kb on - strandat 2475.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,472,263 - +1.1
2,472,532 + araD Shewana3_2065 0.23 -0.6
2,472,540 - araD Shewana3_2065 0.24 +1.9
2,472,540 - araD Shewana3_2065 0.24 +4.9
2,472,653 + araD Shewana3_2065 0.40 -0.6
2,472,687 - araD Shewana3_2065 0.45 +0.4
2,472,716 + araD Shewana3_2065 0.49 -0.7
2,472,751 - araD Shewana3_2065 0.54 -0.0
2,472,875 + araD Shewana3_2065 0.72 -0.0
2,472,983 + araD Shewana3_2065 0.88 -1.0
2,473,163 - +1.3
2,473,163 - +1.5
2,473,359 - Shewana3_2066 0.17 -0.3
2,473,432 - Shewana3_2066 0.22 -0.2
2,473,714 + Shewana3_2066 0.40 -0.6
2,473,714 + Shewana3_2066 0.40 +1.0
2,473,748 - Shewana3_2066 0.43 -1.1
2,473,756 - Shewana3_2066 0.43 -0.3
2,473,926 + Shewana3_2066 0.54 -1.4
2,474,078 - Shewana3_2066 0.65 -0.3
2,474,078 - Shewana3_2066 0.65 +0.6
2,474,155 + Shewana3_2066 0.70 -1.3
2,474,392 - Shewana3_2066 0.85 +0.9
2,474,421 + Shewana3_2066 0.87 -1.5
2,474,517 - +0.2
2,474,560 - -0.9
2,474,620 + -0.7
2,474,801 + Shewana3_2067 0.19 -0.1
2,475,153 + Shewana3_2067 0.77 +0.2
2,475,367 - +3.9
2,475,513 - +1.9
2,475,563 + -0.9

Or see this region's nucleotide sequence