Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2064 and araD are separated by 1 nucleotides araD and Shewana3_2066 are separated by 38 nucleotides Shewana3_2066 and Shewana3_2067 are separated by 76 nucleotides Shewana3_2067 and Shewana3_2068 are separated by 235 nucleotides
Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371
_2064
Shewana3_2065: araD - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) , at 2,472,373 to 2,473,068
araD
Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data) , at 2,473,107 to 2,474,609
_2066
Shewana3_2067: Shewana3_2067 - HAD family hydrolase (RefSeq), at 2,474,686 to 2,475,294
_2067
Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246
_2068
Position (kb)
2473
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2472.263 kb on - strand at 2472.532 kb on + strand, within araD at 2472.540 kb on - strand, within araD at 2472.540 kb on - strand, within araD at 2472.653 kb on + strand, within araD at 2472.687 kb on - strand, within araD at 2472.716 kb on + strand, within araD at 2472.751 kb on - strand, within araD at 2472.875 kb on + strand, within araD at 2472.983 kb on + strand, within araD at 2473.163 kb on - strand at 2473.163 kb on - strand at 2473.359 kb on - strand, within Shewana3_2066 at 2473.432 kb on - strand, within Shewana3_2066 at 2473.714 kb on + strand, within Shewana3_2066 at 2473.714 kb on + strand, within Shewana3_2066 at 2473.748 kb on - strand, within Shewana3_2066 at 2473.756 kb on - strand, within Shewana3_2066 at 2473.926 kb on + strand, within Shewana3_2066 at 2474.078 kb on - strand, within Shewana3_2066 at 2474.078 kb on - strand, within Shewana3_2066 at 2474.155 kb on + strand, within Shewana3_2066 at 2474.392 kb on - strand, within Shewana3_2066 at 2474.421 kb on + strand, within Shewana3_2066 at 2474.517 kb on - strand at 2474.560 kb on - strand at 2474.620 kb on + strand at 2474.801 kb on + strand, within Shewana3_2067 at 2475.153 kb on + strand, within Shewana3_2067 at 2475.367 kb on - strand at 2475.513 kb on - strand at 2475.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml remove 2,472,263 - +1.1 2,472,532 + araD Shewana3_2065 0.23 -0.6 2,472,540 - araD Shewana3_2065 0.24 +1.9 2,472,540 - araD Shewana3_2065 0.24 +4.9 2,472,653 + araD Shewana3_2065 0.40 -0.6 2,472,687 - araD Shewana3_2065 0.45 +0.4 2,472,716 + araD Shewana3_2065 0.49 -0.7 2,472,751 - araD Shewana3_2065 0.54 -0.0 2,472,875 + araD Shewana3_2065 0.72 -0.0 2,472,983 + araD Shewana3_2065 0.88 -1.0 2,473,163 - +1.3 2,473,163 - +1.5 2,473,359 - Shewana3_2066 0.17 -0.3 2,473,432 - Shewana3_2066 0.22 -0.2 2,473,714 + Shewana3_2066 0.40 -0.6 2,473,714 + Shewana3_2066 0.40 +1.0 2,473,748 - Shewana3_2066 0.43 -1.1 2,473,756 - Shewana3_2066 0.43 -0.3 2,473,926 + Shewana3_2066 0.54 -1.4 2,474,078 - Shewana3_2066 0.65 -0.3 2,474,078 - Shewana3_2066 0.65 +0.6 2,474,155 + Shewana3_2066 0.70 -1.3 2,474,392 - Shewana3_2066 0.85 +0.9 2,474,421 + Shewana3_2066 0.87 -1.5 2,474,517 - +0.2 2,474,560 - -0.9 2,474,620 + -0.7 2,474,801 + Shewana3_2067 0.19 -0.1 2,475,153 + Shewana3_2067 0.77 +0.2 2,475,367 - +3.9 2,475,513 - +1.9 2,475,563 + -0.9
Or see this region's nucleotide sequence